Version 5.4
Homo sapiens Gene: CSDE1
Summary
InnateDB Gene IDBG-101304.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol CSDE1
Gene Name cold shock domain containing E1, RNA-binding
Synonyms D1S155E; UNR
Species Homo sapiens
Ensembl Gene ENSG00000009307
Encoded Proteins
IDBP-101308
cold shock domain containing E1, RNA-binding
IDBP-101310
cold shock domain containing E1, RNA-binding
IDBP-101316
cold shock domain containing E1, RNA-binding
IDBP-101318
cold shock domain containing E1, RNA-binding
IDBP-387860
cold shock domain containing E1, RNA-binding
IDBP-589573
cold shock domain containing E1, RNA-binding
IDBP-602776
cold shock domain containing E1, RNA-binding
IDBP-588079
cold shock domain containing E1, RNA-binding
IDBP-596431
cold shock domain containing E1, RNA-binding
IDBP-592386
cold shock domain containing E1, RNA-binding
IDBP-595017
cold shock domain containing E1, RNA-binding
IDBP-594311
cold shock domain containing E1, RNA-binding
IDBP-807187
cold shock domain containing E1, RNA-binding
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 1:114716913-114758676
Strand Reverse strand
Band p13.2
Transcripts
ENST00000339438 ENSP00000342408
ENST00000358528 ENSP00000351329
ENST00000261443 ENSP00000261443
ENST00000369530 ENSP00000358543
ENST00000438362 ENSP00000407724
ENST00000483407
ENST00000483030
ENST00000530886 ENSP00000431297
ENST00000534699 ENSP00000432958
ENST00000530784
ENST00000529046 ENSP00000437159
ENST00000525132 ENSP00000431770
ENST00000534389 ENSP00000435185
ENST00000525878 ENSP00000431562
ENST00000525970 ENSP00000432805
ENST00000533818
ENST00000524652
ENST00000610726 ENSP00000481762
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 31 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 31 [view]
Protein-Protein 27 [view]
Protein-DNA 4 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0008584 male gonad development
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay
Cellular Component
GO:0005737 cytoplasm
GO:0005743 mitochondrial inner membrane
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0070937 CRD-mediated mRNA stability complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000068823
View Gene Order
ENSBTAG00000000678
Not yet available
Pathways
NETPATH
REACTOME
KEGG
INOH
PID NCI
myc_represspathway
Validated targets of C-MYC transcriptional repression
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.69855 Hs.737558
RefSeq NM_001007553 NM_001130523 NM_001242891 NM_001242892 NM_001242893 NM_007158
HUGO
OMIM
CCDS CCDS30811 CCDS30812 CCDS44197 CCDS55626
HPRD 15949
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca