Version 5.4
Homo sapiens Gene: LSM5
Summary
InnateDB Gene IDBG-11615.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LSM5
Gene Name LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Synonyms YER146W
Species Homo sapiens
Ensembl Gene ENSG00000106355
Encoded Proteins
IDBP-11617
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-294401
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-294394
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-294398
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-294397
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-294393
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-294392
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
IDBP-371249
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]
Gene Information
Type Protein coding
Genomic Location Chromosome 7:32485332-32495283
Strand Reverse strand
Band p14.3
Transcripts
ENST00000223084 ENSP00000223084
ENST00000409909 ENSP00000386363
ENST00000409292 ENSP00000386814
ENST00000410044 ENSP00000386707
ENST00000409782 ENSP00000387109
ENST00000409952 ENSP00000387126
ENST00000409987 ENSP00000386275
ENST00000450169 ENSP00000410758
ENST00000468872
ENST00000480956
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 28 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 28 [view]
Protein-Protein 25 [view]
Protein-DNA 3 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0010467 gene expression
GO:0016070 RNA metabolic process
GO:0016071 mRNA metabolic process
GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005829 cytosol
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000091625
View Gene Order
ENSBTAG00000002332
Not yet available
Pathways
NETPATH
REACTOME
REACT_20518
mRNA decay by 5' to 3' exoribonuclease pathway
REACT_20639
Deadenylation-dependent mRNA decay pathway
REACT_71
Gene Expression pathway
KEGG
hsa03018
RNA degradation pathway
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.424908
RefSeq NM_001130710 NM_001139499 NM_012322
HUGO
OMIM
CCDS CCDS47571 CCDS5438
HPRD 06285
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca