Version 5.4
Mus musculus Gene: Kdm5d
Summary
InnateDB Gene IDBG-127663.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Kdm5d
Gene Name lysine (K)-specific demethylase 5D
Synonyms HY; Jarid1d; Smcy
Species Mus musculus
Ensembl Gene ENSMUSG00000056673
Encoded Proteins
IDBP-127665
lysine (K)-specific demethylase 5D
IDBP-787656
lysine (K)-specific demethylase 5D
IDBP-787659
lysine (K)-specific demethylase 5D
IDBP-787661
lysine (K)-specific demethylase 5D
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome Y:897788-956786
Strand Forward strand
Band A1
Transcripts
ENSMUST00000055032 ENSMUSP00000061095
ENSMUST00000189069 ENSMUSP00000139636
ENSMUST00000188910
ENSMUST00000186696 ENSMUSP00000140663
ENSMUST00000186726 ENSMUSP00000140462
ENSMUST00000189626
ENSMUST00000185542
ENSMUST00000187296
ENSMUST00000189955
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 histone demethylase activity (H3-K4 specific)
Biological Process
GO:0034720 histone H3-K4 demethylation
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
Orthologs
No orthologs found for this gene
Pathways
NETPATH
REACTOME
REACT_218274
Chromatin organization pathway
REACT_256030
HDMs demethylate histones pathway
REACT_202766
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene 20592
UniGene
RefSeq NM_011419
OMIM
CCDS CCDS30541
HPRD
IMGT
MGI ID MGI:99780
MGI Symbol Kdm5d
EMBL
GenPept
RNA Seq Atlas 20592

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca