Version 5.4
Mus musculus Gene: 3110043O21Rik
Summary
InnateDB Gene IDBG-135710.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol 3110043O21Rik
Gene Name RIKEN cDNA 3110043O21 gene
Synonyms AI840585
Species Mus musculus
Ensembl Gene ENSMUSG00000028300
Encoded Proteins
IDBP-135712
RIKEN cDNA 3110043O21 gene
IDBP-265195
RIKEN cDNA 3110043O21 gene
IDBP-265197
RIKEN cDNA 3110043O21 gene
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000147894:
Expansion of a hexanucleotide repeat in non-coding sequence between alternate 5' exons in transcripts from this gene is associated with 9p-linked ALS (amyotrophic lateral sclerosis) and FTD (frontotemporal dementia) (PMID: 21944778, 21944779). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:35191285-35226175
Strand Reverse strand
Band A5
Transcripts
ENSMUST00000084724 ENSMUSP00000081775
ENSMUST00000108127 ENSMUSP00000103762
ENSMUST00000108126 ENSMUSP00000103761
ENSMUST00000142628
ENSMUST00000156472
ENSMUST00000130538
ENSMUST00000149138
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0017137 Rab GTPase binding
Biological Process
GO:0006897 endocytosis
GO:0006914 autophagy
Cellular Component
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005768 endosome
GO:0005776 autophagic vacuole
GO:0031410 cytoplasmic vesicle
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000147894
View Gene Order
ENSBTAG00000010059
Not yet available
Cross-References
SwissProt Q6DFW0
TrEMBL
UniProt Splice Variant
Entrez Gene 73205
UniGene Mm.331544 Mm.415891
RefSeq NM_001081343 XM_006538292 XM_006538293 XM_006538294
OMIM
CCDS CCDS38708
HPRD
IMGT
MGI ID MGI:1920455
MGI Symbol 3110043O21Rik
EMBL AL831776 BC076612
GenPept AAH76612 CAO77739
RNA Seq Atlas 73205

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca