Version 5.4
| Mus musculus Gene: Pcdhgc5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Summary | |||||||||
| InnateDB Gene | IDBG-140386.7 | ||||||||
| Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||
| Gene Symbol | Pcdhgc5 | ||||||||
| Gene Name | protocadherin gamma subfamily A, 3 | ||||||||
| Synonyms | mKIAA4054; pc2c; PC43; Pcdh13; Pcdh2 | ||||||||
| Species | Mus musculus | ||||||||
| Ensembl Gene | ENSMUSG00000023036 | ||||||||
| Encoded Proteins |
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
protocadherin gamma subfamily C, 5
|
||||||||
| Protein Structure | |||||||||
| Useful resources | Stemformatics EHFPI ImmGen | ||||||||
| Entrez Gene | |||||||||
| Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000240764:
This gene is a member of the protocadherin gamma gene cluster, one of three related clusters tandemly linked on chromosome five. These gene clusters have an immunoglobulin-like organization, suggesting that a novel mechanism may be involved in their regulation and expression. The gamma gene cluster includes 22 genes divided into 3 subfamilies. Subfamily A contains 12 genes, subfamily B contains 7 genes and 2 pseudogenes, and the more distantly related subfamily C contains 3 genes. The tandem array of 22 large, variable region exons are followed by a constant region, containing 3 exons shared by all genes in the cluster. Each variable region exon encodes the extracellular region, which includes 6 cadherin ectodomains and a transmembrane region. The constant region exons encode the common cytoplasmic region. These neural cadherin-like cell adhesion proteins most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been described for the gamma cluster genes. [provided by RefSeq, Jul 2008] |
||||||||
| Gene Information | |||||||||
| Type | Protein coding | ||||||||
| Genomic Location | Chromosome 18:37674335-37841873 | ||||||||
| Strand | Forward strand | ||||||||
| Band | B3 | ||||||||
| Transcripts | |||||||||
| Interactions | |||||||||
| Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
|
||||||||
| Gene Ontology | |||||||||
Molecular Function |
|
||||||||
| Biological Process |
|
||||||||
| Cellular Component |
|
||||||||
| Orthologs | |||||||||
|
Species
Homo sapiens
|
Gene ID
Gene Order
|
||||||||
| Cross-References | |||||||||
| SwissProt | |||||||||
| TrEMBL | Q5DTQ9 Q8K4A0 Q8K4A4 Q8K4A6 Q91XW9 Q91XX0 Q91XX1 Q91XX4 Q91XX9 Q91XY0 Q91XY5 Q91XY7 Q91XY8 | ||||||||
| UniProt Splice Variant | |||||||||
| Entrez Gene | 93724 | ||||||||
| UniGene | Mm.414190 | ||||||||
| RefSeq | NM_033578 NM_033581 NM_033582 NM_033583 NM_033586 NM_033591 NM_033592 NM_033594 NM_033595 | ||||||||
| OMIM | |||||||||
| CCDS | CCDS29191 CCDS29192 CCDS29193 CCDS29194 CCDS37781 CCDS37782 CCDS37783 CCDS37784 CCDS50259 | ||||||||
| HPRD | |||||||||
| IMGT | |||||||||
| MGI ID | MGI:1935197 MGI:1935201 MGI:1935203 MGI:1935205 MGI:1935215 MGI:1935221 MGI:1935226 MGI:1935228 MGI:1935229 | ||||||||
| MGI Symbol | Pcdhga11 Pcdhga12 Pcdhga3 Pcdhga8 Pcdhga9 Pcdhgb6 Pcdhgc3 Pcdhgc4 Pcdhgc5 | ||||||||
| EMBL | AC020971 AC129315 AF464156 AF464158 AF464163 AF464165 AK220461 AY013794 AY013795 AY013797 AY013802 AY013803 AY013808 AY013811 AY013812 AY013813 BC054528 BC054556 BC054787 BC056998 BC059175 BC059837 BC060691 BC064675 BC064808 BC079567 BC138677 BC138678 CH466528 | ||||||||
| GenPept | AAH54528 AAH54556 AAH54787 AAH56998 AAH59175 AAH59837 AAH60691 AAH64675 AAH64808 AAH79567 AAI38678 AAI38679 AAK26083 AAK26084 AAK26086 AAK26091 AAK26092 AAK26097 AAK26100 AAK26101 AAK26102 AAM93559 AAM93561 AAM93564 AAM93566 BAD90279 EDL10123 EDL10130 EDL10131 EDL10135 | ||||||||
| RNA Seq Atlas | 93703 93706 93707 93708 93711 93716 93717 93723 93724 | ||||||||