Version 5.4
Mus musculus Gene: Rp9
Summary
InnateDB Gene IDBG-144027.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rp9
Gene Name retinitis pigmentosa 9 (human)
Synonyms PAP-1; Rp9h
Species Mus musculus
Ensembl Gene ENSMUSG00000032239
Encoded Proteins
IDBP-144029
retinitis pigmentosa 9 (human)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000164610:
The protein encoded by this gene can be bound and phosphorylated by the protooncogene PIM1 product, a serine/threonine protein kinase . This protein localizes in nuclear speckles containing the splicing factors, and has a role in pre-mRNA splicing. CBF1-interacting protein (CIR), a corepressor of CBF1, can also bind to this protein and effects alternative splicing. Mutations in this gene result in autosomal dominant retinitis pigmentosa-9. This gene has a pseudogene (GeneID: 441212), which is located in tandem array approximately 166 kb distal to this gene. [provided by RefSeq, Sep 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 9:22448311-22468356
Strand Reverse strand
Band A3
Transcripts
ENSMUST00000034763 ENSMUSP00000034763
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 5 interaction(s) predicted by orthology.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 5 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0050890 cognition
Cellular Component
GO:0005634 nucleus
GO:0005785 signal recognition particle receptor complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000164610
View Gene Order
ENSBTAG00000032598
Not yet available
Cross-References
SwissProt P97762
TrEMBL Q3TH81 Q4VA23
UniProt Splice Variant
Entrez Gene 55934
UniGene
RefSeq NM_018739
OMIM
CCDS CCDS40564
HPRD
IMGT
MGI ID MGI:2157166
MGI Symbol Rp9
EMBL AK168391 BC096578 BC115549 BC115550 CH466522 D78255
GenPept AAH96578 AAI15550 AAI15551 BAA11319 BAE40317 EDL25277
RNA Seq Atlas 55934

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca