Version 5.4
Mus musculus Gene: Abca13
Summary
InnateDB Gene IDBG-149760.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Abca13
Gene Name ATP-binding cassette, sub-family A (ABC1), member 13
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000004668
Encoded Proteins
IDBP-149762
ATP-binding cassette, sub-family A (ABC1), member 13
IDBP-535193
ATP-binding cassette, sub-family A (ABC1), member 13
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000179869:
In human, the ATP-binding cassette (ABC) family of transmembrane transporters has at least 48 genes and 7 gene subfamilies. This gene is a member of ABC gene subfamily A (ABCA). Genes within the ABCA family typically encode several thousand amino acids. Like other ABC transmembrane transporter proteins, this protein has 12 or more transmembrane alpha-helix domains that likely arrange to form a single central chamber with multiple substrate binding sites. It is also predicted to have two large extracellular domains and two nucleotide binding domains as is typical for ABCA proteins. Alternative splice variants have been described but their biological validity has not been demonstrated.[provided by RefSeq, Mar 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:9191942-9684259
Strand Forward strand
Band A1
Transcripts
ENSMUST00000042740 ENSMUSP00000040465
ENSMUST00000141233
ENSMUST00000151522 ENSMUSP00000116819
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0005524 ATP binding
GO:0016887 ATPase activity
GO:0017111 nucleoside-triphosphatase activity
Biological Process
GO:0006200 ATP catabolic process
GO:0006810 transport
GO:0008150 biological_process
Cellular Component
GO:0005575 cellular_component
GO:0016021 integral component of membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000179869
View Gene Order
ENSBTAG00000003531
Not yet available
Pathways
NETPATH
REACTOME
KEGG
mmu02010
ABC transporters pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
hsa02010
ABC transporters pathway
INOH
PID NCI
Cross-References
SwissProt Q5SSE9
TrEMBL
UniProt Splice Variant
Entrez Gene 268379
UniGene Mm.39270
RefSeq NM_178259 XM_006514705 XM_006514707
OMIM
CCDS CCDS36110
HPRD
IMGT
MGI ID MGI:2388707
MGI Symbol Abca13
EMBL AK036546 AK044229 AL645994 AL663110 AL663114 AL669853 AY160971
GenPept AAO18684 BAC29471 BAC31829 CAI23929 CAI24458 CAI24652 CAI24813
RNA Seq Atlas 268379

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca