Version 5.4
Mus musculus Gene: Prdm5
Summary
InnateDB Gene IDBG-153270.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Prdm5
Gene Name PR domain containing 5
Synonyms 4432417F03Rik; 6530401I24Rik; AI197291; E130112L17Rik; PFM2
Species Mus musculus
Ensembl Gene ENSMUSG00000029913
Encoded Proteins
IDBP-153272
PR domain containing 5
IDBP-153274
PR domain containing 5
IDBP-153276
PR domain containing 5
IDBP-619752
PR domain containing 5
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000138738:
The protein encoded by this gene is a transcription factor of the PR-domain protein family. It contains a PR-domain and multiple zinc finger motifs. Transcription factors of the PR-domain family are known to be involved in cell differentiation and tumorigenesis. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 6:65778988-65936373
Strand Forward strand
Band C1
Transcripts
ENSMUST00000081219 ENSMUSP00000079979
ENSMUST00000031973 ENSMUSP00000031973
ENSMUST00000031976 ENSMUSP00000031976
ENSMUST00000173538
ENSMUST00000172638 ENSMUSP00000133423
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000976 transcription regulatory region sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding
GO:0070491 repressing transcription factor binding
Biological Process
GO:0000278 mitotic cell cycle
GO:0006351 transcription, DNA-templated
GO:0016575 histone deacetylation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0051567 histone H3-K9 methylation
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000138738
View Gene Order
ENSBTAG00000012111
Not yet available
Cross-References
SwissProt
TrEMBL G3UWU3
UniProt Splice Variant
Entrez Gene 70779
UniGene Mm.263355
RefSeq XM_006506600 NM_027547 XM_006506601 XM_006506603
OMIM
CCDS CCDS20208
HPRD
IMGT
MGI ID MGI:1918029
MGI Symbol Prdm5
EMBL AC154005 AC158677
GenPept
RNA Seq Atlas 70779

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca