Version 5.4
Mus musculus Gene: Jmjd1c
Summary
InnateDB Gene IDBG-159742.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Jmjd1c
Gene Name jumonji domain containing 1C
Synonyms 5430433L24Rik; D630035I23Rik; Jmjdic; TRIP8
Species Mus musculus
Ensembl Gene ENSMUSG00000037876
Encoded Proteins
IDBP-159746
jumonji domain containing 1C
IDBP-625867
jumonji domain containing 1C
IDBP-625875
jumonji domain containing 1C
IDBP-625876
jumonji domain containing 1C
IDBP-625878
jumonji domain containing 1C
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000171988:
Gene Information
Type Protein coding
Genomic Location Chromosome 10:67096125-67256326
Strand Forward strand
Band B5.1
Transcripts
ENSMUST00000051446 ENSMUSP00000056227
ENSMUST00000174062
ENSMUST00000173295
ENSMUST00000174317 ENSMUSP00000134246
ENSMUST00000174408 ENSMUSP00000134551
ENSMUST00000173661
ENSMUST00000173689 ENSMUSP00000133700
ENSMUST00000173949
ENSMUST00000173187
ENSMUST00000173762 ENSMUSP00000134678
ENSMUST00000173236
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016568 chromatin modification
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000171988
View Gene Order
ENSBTAG00000001573
Not yet available
Pathways
NETPATH
REACTOME
REACT_224553
Hemostasis pathway
REACT_198649
Factors involved in megakaryocyte development and platelet production pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_24970
Factors involved in megakaryocyte development and platelet production pathway
REACT_604
Hemostasis pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.23846 Mm.417464 Mm.418190 Mm.473497 Mm.484351
RefSeq NM_001242396 NM_207221 XM_006513035 XM_006513036 XM_006513037 XM_006513040 XM_006513041 XM_006513042 XM_006513043 XM_006513044
OMIM
CCDS CCDS56707 CCDS56708
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca