Version 5.4
Homo sapiens Gene: HMG20B
Summary
InnateDB Gene IDBG-17410.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol HMG20B
Gene Name high mobility group 20B
Synonyms BRAF25; BRAF35; HMGX2; HMGXB2; PP7706; pp8857; SMARCE1r; SOXL
Species Homo sapiens
Ensembl Gene ENSG00000064961
Encoded Proteins
IDBP-17412
high mobility group 20B
IDBP-17414
high mobility group 20B
IDBP-364267
high mobility group 20B
IDBP-364284
high mobility group 20B
IDBP-364285
high mobility group 20B
IDBP-364289
high mobility group 20B
IDBP-765996
IDBP-808500
high mobility group 20B
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 19:3572777-3579088
Strand Forward strand
Band p13.3
Transcripts
ENST00000333651 ENSP00000328269
ENST00000262949 ENSP00000262949
ENST00000416526 ENSP00000410924
ENST00000417382 ENSP00000393904
ENST00000453933 ENSP00000402877
ENST00000435022 ENSP00000393481
ENST00000470356
ENST00000488973
ENST00000486028
ENST00000483417
ENST00000487894
ENST00000464304
ENST00000493191
ENST00000461099
ENST00000585900 ENSP00000465293
ENST00000585741
ENST00000619543 ENSP00000480877
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 32 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 32 [view]
Protein-Protein 32 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007049 cell cycle
GO:0007596 blood coagulation
GO:0016568 chromatin modification
GO:0033234 negative regulation of protein sumoylation
GO:0035914 skeletal muscle cell differentiation
GO:0045666 positive regulation of neuron differentiation
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
Orthologs
Species
Mus musculus
Gene ID
Gene Order
ENSMUSG00000020232
View Gene Order
Pathways
NETPATH
REACTOME
REACT_24970
Factors involved in megakaryocyte development and platelet production pathway
REACT_228222
HDACs deacetylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
REACT_604
Hemostasis pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q9P0W2
TrEMBL B5MDG7 C9J8X5 C9JQA7 C9K049 F8WES5 K7EJR8
UniProt Splice Variant
Entrez Gene 10362
UniGene Hs.406534
RefSeq NM_006339
HUGO HGNC:5002
OMIM 605535
CCDS CCDS45919
HPRD
IMGT
EMBL AC005786 AC116968 AF072165 AF072836 AF146223 AF288679 AF331191 AK090733 AL355709 BC002552 BC003505 BC004408 BC021585 CH471139 CR456754
GenPept AAC26860 AAC62837 AAF66707 AAF76253 AAG01174 AAG60060 AAH02552 AAH03505 AAH04408 AAH21585 BAC03510 CAB90809 CAG33035 EAW69306 EAW69307 EAW69308
RNA Seq Atlas 10362

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca