Version 5.4
Mus musculus Gene: Atg13
Summary
InnateDB Gene IDBG-191556.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Atg13
Gene Name autophagy related 13
Synonyms 1110053A20Rik; D2Ertd391e; Harbi1
Species Mus musculus
Ensembl Gene ENSMUSG00000027244
Encoded Proteins
IDBP-191558
ATG13 autophagy related 13 homolog (S. cerevisiae)
IDBP-191560
ATG13 autophagy related 13 homolog (S. cerevisiae)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000175224:
Gene Information
Type Protein coding
Genomic Location Chromosome 2:91674618-91710576
Strand Reverse strand
Band E1
Transcripts
ENSMUST00000076803 ENSMUSP00000076081
ENSMUST00000028678 ENSMUSP00000028678
ENSMUST00000139548
ENSMUST00000126000
ENSMUST00000153631
ENSMUST00000136412
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 8 experimentally validated interaction(s) in this database.
They are also associated with 16 interaction(s) predicted by orthology.
Experimentally validated
Total 8 [view]
Protein-Protein 8 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 16 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0019901 protein kinase binding
Biological Process
GO:0000045 autophagic vacuole assembly
Cellular Component
GO:0000407 pre-autophagosomal structure
GO:0005829 cytosol
GO:0070969 ULK1-ATG13-FIP200 complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000175224
View Gene Order
ENSBTAG00000017325
Not yet available
Pathways
NETPATH
REACTOME
KEGG
mmu04140
Regulation of autophagy pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
hsa04140
Regulation of autophagy pathway
INOH
PID NCI
mtor_4pathway
mTOR signaling pathway
Cross-References
SwissProt Q91YI1
TrEMBL
UniProt Splice Variant
Entrez Gene 51897
UniGene Mm.398886 Mm.483747
RefSeq NM_145528 XM_006499890
OMIM
CCDS CCDS16438
HPRD
IMGT
MGI ID MGI:1196429
MGI Symbol Atg13
EMBL AK122339 AK149672 AK171206 AK171440 AL714023 BC016669 BC023673 BC023712 BC033419 CH466519
GenPept AAH16669 AAH23673 AAH23712 AAH33419 BAC65621 BAE29016 BAE42312 BAE42453 CAM14512 CAM14513 EDL27574
RNA Seq Atlas 51897

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca