InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Csda

Summary

InnateDB Gene

IDBG-193395.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Csda

Gene Name

cold shock domain protein A

Synonyms

Csda; dbpA; Dpba; MSY3; MSY4; oxyR; Yb2

Species

Mus musculus

Ensembl Gene

ENSMUSG00000030189

Encoded Proteins

IDBP-193397

cold shock domain protein A

IDBP-193399

cold shock domain protein A

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000060138:

Gene Information

Type

Protein coding

Genomic Location

Chromosome 6:131364858-131388450

Strand

Reverse strand

Band

Transcripts

ENSMUST00000032309	ENSMUSP00000032309
ENSMUST00000087865	ENSMUSP00000085172

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 15 experimentally validated interaction(s) in this database.
They are also associated with 30 interaction(s) predicted by orthology.

Experimentally validated
Total	15 [view]
Protein-Protein	15 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	30 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227	RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0003697	single-stranded DNA binding
GO:0003730	mRNA 3'-UTR binding
GO:0005515	protein binding
GO:0044822	poly(A) RNA binding

Biological Process

GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0001701	in utero embryonic development
GO:0006351	transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated
GO:0007283	spermatogenesis
GO:0008584	male gonad development
GO:0009566	fertilization
GO:0043066	negative regulation of apoptotic process
GO:0046622	positive regulation of organ growth
GO:0048642	negative regulation of skeletal muscle tissue development
GO:0060546	negative regulation of necroptotic process
GO:0060547	negative regulation of necrotic cell death
GO:0071356	cellular response to tumor necrosis factor
GO:0071474	cellular hyperosmotic response
GO:1902219	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress

Cellular Component

GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005844	polysome
GO:0005921	gap junction
GO:0030529	ribonucleoprotein complex

Orthologs

Species

Homo sapiens

Bos taurus

Gene ID

Gene Order

ENSG00000060138

View Gene Order

ENSBTAG00000009663

Not yet available

Pathways

NETPATH

REACTOME

KEGG

mmu04530

Tight junction pathway

INOH

PID NCI

Pathway Predictions based on Human Orthology Data

NETPATH

REACTOME

KEGG

hsa04530

Tight junction pathway

INOH

PID NCI

Cross-References

SwissProt

Q9JKB3

TrEMBL

UniProt Splice Variant

Entrez Gene

56449

UniGene

Mm.458000

RefSeq

NM_011733 NM_139117

OMIM

CCDS

CCDS20605 CCDS20606

HPRD

IMGT

MGI ID

MGI:2137670

MGI Symbol

Ybx3

EMBL

AF246224 AF248546 AF248547 BC048242 BC062377

GenPept

AAF61741 AAG14418 AAG14419 AAH48242 AAH62377

RNA Seq Atlas

56449