InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Copa

Summary

InnateDB Gene

IDBG-204973.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Copa

Gene Name

coatomer protein complex subunit alpha

Synonyms

AU040324; xenin

Species

Mus musculus

Ensembl Gene

ENSMUSG00000026553

Encoded Proteins

IDBP-204975

coatomer protein complex subunit alpha

IDBP-534137

coatomer protein complex subunit alpha

IDBP-534076

coatomer protein complex subunit alpha

IDBP-534639

coatomer protein complex subunit alpha

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000122218:
In eukaryotic cells, protein transport between the endoplasmic reticulum and Golgi compartments is mediated in part by non-clathrin-coated vesicular coat proteins (COPs). Seven coat proteins have been identified, and they represent subunits of a complex known as coatomer. The subunits are designated alpha-COP, beta-COP, beta-prime-COP, gamma-COP, delta-COP, epsilon-COP, and zeta-COP. The alpha-COP, encoded by COPA, shares high sequence similarity with RET1P, the alpha subunit of the coatomer complex in yeast. Also, the N-terminal 25 amino acids of alpha-COP encode the bioactive peptide, xenin, which stimulates exocrine pancreatic secretion and may act as a gastrointestinal hormone. Alternative splicing results in multiple splice forms encoding distinct isoforms. [provided by RefSeq, Jul 2008]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 1:172082529-172122330

Strand

Forward strand

Band

Transcripts

ENSMUST00000027833	ENSMUSP00000027833
ENSMUST00000135192	ENSMUSP00000118179
ENSMUST00000138407
ENSMUST00000124289	ENSMUSP00000118899
ENSMUST00000126634
ENSMUST00000134468
ENSMUST00000150298
ENSMUST00000152403	ENSMUSP00000123214
ENSMUST00000133909
ENSMUST00000122845
ENSMUST00000142765

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 32 experimentally validated interaction(s) in this database.
They are also associated with 37 interaction(s) predicted by orthology.

Experimentally validated
Total	32 [view]
Protein-Protein	32 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	37 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005179	hormone activity
GO:0005198	structural molecule activity
GO:0005515	protein binding

Biological Process

GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport
GO:0030157	pancreatic juice secretion

Cellular Component

GO:0005615	extracellular space
GO:0005737	cytoplasm
GO:0016020	membrane
GO:0030117	membrane coat
GO:0030126	COPI vesicle coat
GO:0070062	extracellular vesicular exosome