Version 5.4
Homo sapiens Gene: SCAF8
Summary
InnateDB Gene IDBG-246149.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SCAF8
Gene Name SR-related CTD-associated factor 8
Synonyms RBM16
Species Homo sapiens
Ensembl Gene ENSG00000213079
Encoded Proteins
IDBP-98239
SR-related CTD-associated factor 8
IDBP-98241
SR-related CTD-associated factor 8
IDBP-388003
SR-related CTD-associated factor 8
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 6:154733325-154834244
Strand Forward strand
Band q25.2
Transcripts
ENST00000367186 ENSP00000356154
ENST00000367178 ENSP00000356146
ENST00000417268 ENSP00000413098
ENST00000461219
ENST00000464628
ENST00000479234
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 27 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 27 [view]
Protein-Protein 20 [view]
Protein-DNA 7 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0043175 RNA polymerase core enzyme binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0016363 nuclear matrix
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000046201
View Gene Order
ENSBTAG00000031917
Not yet available
Cross-References
SwissProt Q9UPN6
TrEMBL Q8NDE9 Q9H8B2
UniProt Splice Variant
Entrez Gene 22828
UniGene Hs.591329 Hs.603396
RefSeq NM_001286199 NM_014892 NM_001286188 NM_001286189 NM_001286194
HUGO HGNC:20959
OMIM
CCDS CCDS5247 CCDS69226 CCDS75541
HPRD 11487
IMGT
EMBL AB029039 AK023859 AL121952 AL136976 AL591499 AL833928 BC070071
GenPept AAH70071 BAA83068 BAB14705 CAD38784 CAH70694 CAI21474 CAI21482
RNA Seq Atlas 22828

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca