Version 5.4
Homo sapiens Gene: HPS4
Summary
InnateDB Gene IDBG-3138.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol HPS4
Gene Name Hermansky-Pudlak syndrome 4
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000100099
Encoded Proteins
IDBP-3140
Hermansky-Pudlak syndrome 4
IDBP-233725
Hermansky-Pudlak syndrome 4
IDBP-294889
Hermansky-Pudlak syndrome 4
IDBP-368671
Hermansky-Pudlak syndrome 4
IDBP-368675
Hermansky-Pudlak syndrome 4
IDBP-368677
Hermansky-Pudlak syndrome 4
IDBP-481702
Hermansky-Pudlak syndrome 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein component of biogenesis of lysosome-related organelles complexes (BLOC). BLOC complexes are important for the formation of endosomal-lysosomal organelles such as melanosomes and platelet dense granules. Mutations in this gene result in subtype 4 of Hermansky-Pudlak syndrome, a form of albinism. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 22:26443423-26483837
Strand Reverse strand
Band q12.1
Transcripts
ENST00000336873 ENSP00000338457
ENST00000398145 ENSP00000381213
ENST00000402105 ENSP00000384185
ENST00000439453 ENSP00000406764
ENST00000429411 ENSP00000399705
ENST00000422379 ENSP00000415081
ENST00000519774
ENST00000493455
ENST00000491142
ENST00000464362 ENSP00000430291
ENST00000466781
ENST00000496385
ENST00000485842
ENST00000459918
ENST00000481910
ENST00000483631
ENST00000479064
ENST00000473782
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0042803 protein homodimerization activity
GO:0046983 protein dimerization activity
Biological Process
GO:0006605 protein targeting
GO:0006996 organelle organization
GO:0007040 lysosome organization
GO:0007596 blood coagulation
GO:0007599 hemostasis
GO:0030318 melanocyte differentiation
GO:0048075 positive regulation of eye pigmentation
GO:0050821 protein stabilization
Cellular Component
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0016020 membrane
GO:0016023 cytoplasmic membrane-bounded vesicle
GO:0031085 BLOC-3 complex
GO:0042470 melanosome
GO:0042827 platelet dense granule
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000042328
View Gene Order
ENSBTAG00000017038
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.474436
RefSeq NM_022081 NM_152841 XM_006724356 XM_006724357 XM_006724358 XM_006724363
HUGO
OMIM
CCDS CCDS13835 CCDS46677
HPRD 05983
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca