Version 5.4
Homo sapiens Gene: SDF2
Summary
InnateDB Gene IDBG-37183.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SDF2
Gene Name stromal cell-derived factor 2
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000132581
Encoded Proteins
IDBP-37185
stromal cell-derived factor 2
IDBP-758669
IDBP-762074
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene is believed to be a secretory protein. It has regions of similarity to hydrophilic segments of yeast mannosyltransferases. Its expression is ubiquitous and the gene appears to be relatively conserved among mammals. Alternate splicing results in both coding and non-coding variants. A pseudogene of this gene is located on chromosome 15. [provided by RefSeq, Dec 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 17:28648356-28662189
Strand Reverse strand
Band q11.2
Transcripts
ENST00000247020 ENSP00000247020
ENST00000587788 ENSP00000466083
ENST00000592250
ENST00000585749
ENST00000587338
ENST00000589788
ENST00000591903 ENSP00000466102
ENST00000588472
ENST00000585428
ENST00000587629
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
Experimentally validated
Total 7 [view]
Protein-Protein 4 [view]
Protein-DNA 3 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity
Biological Process
GO:0006486 protein glycosylation
GO:0035269 protein O-linked mannosylation
Cellular Component
GO:0005615 extracellular space
GO:0016020 membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000002064
View Gene Order
ENSBTAG00000012845
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.514036 Hs.608978
RefSeq NM_006923
HUGO
OMIM
CCDS CCDS11238
HPRD 04243
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca