Version 5.4
Homo sapiens Gene: PDLIM4
Summary
InnateDB Gene IDBG-41704.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PDLIM4
Gene Name PDZ and LIM domain 4
Synonyms RIL
Species Homo sapiens
Ensembl Gene ENSG00000131435
Encoded Proteins
IDBP-41708
PDZ and LIM domain 4
IDBP-41710
PDZ and LIM domain 4
IDBP-376223
PDZ and LIM domain 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein which may be involved in bone development. Mutations in this gene are associated with susceptibility to osteoporosis. [provided by RefSeq, Nov 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 5:132257671-132273454
Strand Forward strand
Band q31.1
Transcripts
ENST00000253754 ENSP00000253754
ENST00000379018 ENSP00000368303
ENST00000418373 ENSP00000411753
ENST00000463615
ENST00000474421
ENST00000484620
ENST00000462597
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 5 [view]
Protein-Protein 4 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0008270 zinc ion binding
Biological Process
Cellular Component
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000020388
View Gene Order
ENSBTAG00000015426
Not yet available
Pathways
NETPATH
NetPath_4
EGFR1 pathway
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.424312
RefSeq NM_001131027 NM_003687
HUGO
OMIM
CCDS CCDS4152 CCDS47261
HPRD 04571
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca