Version 5.4
Homo sapiens Gene: SPTBN4
Summary
InnateDB Gene IDBG-51618.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SPTBN4
Gene Name spectrin, beta, non-erythrocytic 4
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000160460
Encoded Proteins
IDBP-51620
spectrin, beta, non-erythrocytic 4
IDBP-51624
spectrin, beta, non-erythrocytic 4
IDBP-246497
spectrin, beta, non-erythrocytic 4
IDBP-246499
spectrin, beta, non-erythrocytic 4
IDBP-765504
IDBP-766023
IDBP-761718
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. This gene is one member of a family of beta-spectrin genes. The encoded protein localizes to the nuclear matrix, PML nuclear bodies, and cytoplasmic vesicles. A highly similar gene in the mouse is required for localization of specific membrane proteins in polarized regions of neurons. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 19:40466241-40576464
Strand Forward strand
Band q13.2
Transcripts
ENST00000352632 ENSP00000263373
ENST00000338932 ENSP00000340345
ENST00000392025 ENSP00000375879
ENST00000392023 ENSP00000375877
ENST00000595690
ENST00000597389 ENSP00000472136
ENST00000593932
ENST00000598249 ENSP00000469242
ENST00000593816
ENST00000598775
ENST00000596900
ENST00000595535 ENSP00000470693
ENST00000596411
ENST00000599926
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 25 experimentally validated interaction(s) in this database.
Experimentally validated
Total 25 [view]
Protein-Protein 24 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003779 actin binding
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0005543 phospholipid binding
GO:0019902 phosphatase binding
GO:0030506 ankyrin binding
GO:0030507 spectrin binding
Biological Process
GO:0002028 regulation of sodium ion transport
GO:0007016 cytoskeletal anchoring at plasma membrane
GO:0007409 axonogenesis
GO:0007411 axon guidance
GO:0007605 sensory perception of sound
GO:0007628 adult walking behavior
GO:0009566 fertilization
GO:0010459 negative regulation of heart rate
GO:0016192 vesicle-mediated transport
GO:0019226 transmission of nerve impulse
GO:0021952 central nervous system projection neuron axonogenesis
GO:0022414 reproductive process
GO:0030534 adult behavior
GO:0033135 regulation of peptidyl-serine phosphorylation
GO:0034613 cellular protein localization
GO:0040018 positive regulation of multicellular organism growth
GO:0045162 clustering of voltage-gated sodium channels
GO:0051693 actin filament capping
GO:0061337 cardiac conduction
GO:0090002 establishment of protein localization to plasma membrane
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005912 adherens junction
GO:0008091 spectrin
GO:0016020 membrane
GO:0016363 nuclear matrix
GO:0016605 PML body
GO:0030424 axon
GO:0033268 node of Ranvier
GO:0033270 paranode region of axon
GO:0043025 neuronal cell body
GO:0043194 axon initial segment
GO:0043203 axon hillock
GO:0070852 cell body fiber
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000011751
View Gene Order
ENSBTAG00000004751
Not yet available
Pathways
NETPATH
REACTOME
REACT_22266
Interaction between L1 and Ankyrins pathway
REACT_22205
L1CAM interactions pathway
REACT_18334
NCAM signaling for neurite out-growth pathway
REACT_111045
Developmental Biology pathway
REACT_18266
Axon guidance pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q9H254
TrEMBL Q9UFA1
UniProt Splice Variant
Entrez Gene 57731
UniGene Hs.32706 Hs.595840
RefSeq NM_025213 NM_020971
HUGO HGNC:14896
OMIM 606214
CCDS CCDS42569 CCDS12559
HPRD 09372
IMGT
EMBL AB046862 AC020929 AF082075 AF311855 AF311856 AL133093 AY004226 AY004227
GenPept AAF93171 AAF93172 AAF93173 AAG38874 AAG42473 AAG42474 BAB13468 CAB61407
RNA Seq Atlas 57731

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca