Mus musculus Gene: Irf4
Summary
InnateDB Gene IDBG-54412.1
Last Modified 2018-06-05 [Report errors or provide feedback]
Gene Symbol Irf4
Gene Name interferon regulatory factor 4
Synonyms AI385587; IRF-4; LSIRF; NF-EM5; Spip
Species Mus musculus
Ensembl Gene ENSMUSG00000021356
Encoded Proteins
interferon regulatory factor 4
interferon regulatory factor 4
interferon regulatory factor 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
InnateDB Annotation from Orthologs
Summary
[Homo sapiens] IRF4 participates in the regulation of lymphoid cell apoptosis by modulating the efficiency of the Fas-mediated death signal.
[Homo sapiens] IRF4 provides a positive feedback signal for its own gene expression in dendritic cells (DCs) and the expression of IRF4 mRNA, but not of other IRFs, is specifically up-regulated during DC differentiation.
[Homo sapiens] Following NOD2 activation, IRF4 interacts with MYD88, TRAF6, and RIPK2 and downregulates K63-linked polyubiquitinylation of RICK and TRAF6 leading to disruption of NFkB activation pathways.
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000137265:
The protein encoded by this gene belongs to the IRF (interferon regulatory factor) family of transcription factors, characterized by an unique tryptophan pentad repeat DNA-binding domain. The IRFs are important in the regulation of interferons in response to infection by virus, and in the regulation of interferon-inducible genes. This family member is lymphocyte specific and negatively regulates Toll-like-receptor (TLR) signaling that is central to the activation of innate and adaptive immune systems. A chromosomal translocation involving this gene and the IgH locus, t(6;14)(p25;q32), may be a cause of multiple myeloma. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Aug 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:30749226-30766976
Strand Forward strand
Band A3.2
Transcripts
ENSMUST00000021784 ENSMUSP00000021784
ENSMUST00000110307 ENSMUSP00000105936
ENSMUST00000222125 ENSMUSP00000152134
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 75 experimentally validated interaction(s) in this database.
They are also associated with 69 interaction(s) predicted by orthology.
Experimentally validated
Total 75 [view]
Protein-Protein 0
Protein-DNA 75 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 69 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 DNA binding transcription factor activity
GO:0005515 protein binding
GO:0016279 protein-lysine N-methyltransferase activity
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006479 protein methylation
GO:0018022 peptidyl-lysine methylation
GO:0034122 negative regulation of toll-like receptor signaling pathway
GO:0042832 defense response to protozoan
GO:0043011 myeloid dendritic cell differentiation
GO:0043388 positive regulation of DNA binding
GO:0043966 histone H3 acetylation
GO:0043967 histone H4 acetylation
GO:0045082 positive regulation of interleukin-10 biosynthetic process
GO:0045086 positive regulation of interleukin-2 biosynthetic process
GO:0045368 positive regulation of interleukin-13 biosynthetic process
GO:0045404 positive regulation of interleukin-4 biosynthetic process
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0072540 T-helper 17 cell lineage commitment
Cellular Component
GO:0000788 nuclear nucleosome
GO:0005634 nucleus
GO:0005654 nucleoplasm
Orthologs
Species
Bos taurus
Homo sapiens
Gene ID
Gene Order
Not yet available
Pathways
NETPATH
REACTOME
KEGG
Th17 cell differentiation pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
Signaling by Interleukins pathway
Immune System pathway
Interferon Signaling pathway
Interferon alpha/beta signaling pathway
Interleukin-4 and Interleukin-13 signaling pathway
Cytokine Signaling in Immune system pathway
Interferon gamma signaling pathway
KEGG
Th17 cell differentiation pathway
INOH
PID NCI
IL4-mediated signaling events
Calcineurin-regulated NFAT-dependent transcription in lymphocytes
Cross-References
SwissProt Q64287
TrEMBL A0A1Y7VIT1 Q5SUZ4 Q5SUZ5
UniProt Splice Variant
Entrez Gene 16364
UniGene
RefSeq NM_001347508 NM_013674 XM_006516560
OMIM
CCDS CCDS26419 CCDS84017
HPRD
IMGT
MGI ID MGI:1096873
MGI Symbol Irf4
EMBL AK089319 AK089819 AK154315 AL645745 BC137713 BC137714 CH466561 U11692 U20949 U34307
GenPept AAA75283 AAA75309 AAA75316 AAA75317 AAI37714 AAI37715 BAC40840 BAC40969 BAE32509 EDL32379
RNA Seq Atlas 16364