Version 5.4
Homo sapiens Gene: SMYD1
Summary
InnateDB Gene IDBG-60363.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SMYD1
Gene Name SET and MYND domain containing 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000115593
Encoded Proteins
IDBP-382285
SET and MYND domain containing 1
IDBP-382286
SET and MYND domain containing 1
IDBP-382289
SET and MYND domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 2:88067780-88113387
Strand Forward strand
Band p11.2
Transcripts
ENST00000419482 ENSP00000393453
ENST00000444564 ENSP00000407888
ENST00000438570 ENSP00000387482
ENST00000468008
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 26 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 26 [view]
Protein-Protein 26 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0018024 histone-lysine N-methyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006338 chromatin remodeling
GO:0006351 transcription, DNA-templated
GO:0007507 heart development
GO:0010831 positive regulation of myotube differentiation
GO:0034968 histone lysine methylation
GO:0035914 skeletal muscle cell differentiation
GO:0045663 positive regulation of myoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000055027
View Gene Order
ENSBTAG00000021120
Not yet available
Cross-References
SwissProt
TrEMBL C9JUP3
UniProt Splice Variant
Entrez Gene 150572
UniGene Hs.516176
RefSeq NM_198274
HUGO HGNC:20986
OMIM 606846
CCDS CCDS33240
HPRD 06025
IMGT
EMBL AC092836
GenPept
RNA Seq Atlas 150572

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca