InnateDB: Systems Biology of the Innate Immune Response

Bos taurus Gene: TRIM9

Summary

InnateDB Gene

IDBG-646464.3

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

TRIM9

Gene Name

E3 ubiquitin-protein ligase TRIM9

Synonyms

Species

Bos taurus

Ensembl Gene

ENSBTAG00000010103

Encoded Proteins

IDBP-699273

E3 ubiquitin-protein ligase TRIM9

IDBP-699274

E3 ubiquitin-protein ligase TRIM9

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

InnateDB Annotation from Orthologs

Summary

PMID 23438823

[Homo sapiens] TRIM9 was identified in a systematic screen for positive regulators of innate immune responses.

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000100505:
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. Its function has not been identified. Alternate splicing of this gene generates two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 10:43871178-43988950

Strand

Reverse strand

Band

Transcripts

ENSBTAT00000045179	ENSBTAP00000042592
ENSBTAT00000013346	ENSBTAP00000013346

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 23 interaction(s) predicted by orthology.

Predicted by orthology
Total	23 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0004842	ubiquitin-protein transferase activity
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0016874	ligase activity
GO:0042803	protein homodimerization activity
GO:0046872	metal ion binding

Biological Process

GO:0016567	protein ubiquitination
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process

Cellular Component

GO:0005622	intracellular
GO:0005737	cytoplasm
GO:0005856	cytoskeleton
GO:0008021	synaptic vesicle
GO:0030054	cell junction
GO:0030425	dendrite
GO:0031410	cytoplasmic vesicle
GO:0042995	cell projection
GO:0045202	synapse