Version 5.4
Homo sapiens Gene: TRAPPC4
Summary
InnateDB Gene IDBG-74164.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol TRAPPC4
Gene Name trafficking protein particle complex 4
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000196655
Encoded Proteins
IDBP-74166
trafficking protein particle complex 4
IDBP-383804
trafficking protein particle complex 4
IDBP-596328
trafficking protein particle complex 4
IDBP-585048
trafficking protein particle complex 4
IDBP-598672
trafficking protein particle complex 4
IDBP-587600
trafficking protein particle complex 4
IDBP-598287
trafficking protein particle complex 4
IDBP-583640
trafficking protein particle complex 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:119018432-119025454
Strand Forward strand
Band q23.3
Transcripts
ENST00000359005 ENSP00000351896
ENST00000434101 ENSP00000405033
ENST00000447216
ENST00000533632 ENSP00000436005
ENST00000527680
ENST00000528230 ENSP00000436827
ENST00000525303 ENSP00000435339
ENST00000531290
ENST00000533058 ENSP00000432920
ENST00000525079 ENSP00000433658
ENST00000533012 ENSP00000436281
ENST00000533149
ENST00000524797
ENST00000526141
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 18 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 18 [view]
Protein-Protein 17 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
GO:0006810 transport
GO:0006888 ER to Golgi vesicle-mediated transport
GO:0016358 dendrite development
GO:0030198 extracellular matrix organization
Cellular Component
GO:0005622 intracellular
GO:0005783 endoplasmic reticulum
GO:0005795 Golgi stack
GO:0005801 cis-Golgi network
GO:0008021 synaptic vesicle
GO:0030008 TRAPP complex
GO:0030425 dendrite
GO:0045202 synapse
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000032112
View Gene Order
ENSBTAG00000008075
Not yet available
Pathways
NETPATH
REACTOME
REACT_118779
Extracellular matrix organization pathway
REACT_163942
Syndecan interactions pathway
REACT_163874
Non-integrin membrane-ECM interactions pathway
KEGG
INOH
PID NCI
syndecan_2_pathway
Syndecan-2-mediated signaling events
Cross-References
SwissProt Q9Y296
TrEMBL G3V1A0
UniProt Splice Variant
Entrez Gene 51399
UniGene Hs.132760
RefSeq NM_016146
HUGO HGNC:19943
OMIM 610971
CCDS CCDS8407
HPRD 18220
IMGT
EMBL AF078862 AF105025 AF151862 AF161520 AK290520 AP003392 BC010866 CH471065
GenPept AAD34099 AAD44494 AAF21897 AAF29135 AAH10866 BAF83209 EAW67428 EAW67430
RNA Seq Atlas 100500840 51399

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca