Version 5.4
Homo sapiens Gene: SYF2
Summary
InnateDB Gene IDBG-94274.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SYF2
Gene Name SYF2 homolog, RNA splicing factor (S. cerevisiae)
Synonyms CBPIN; fSAP29; NTC31; P29
Species Homo sapiens
Ensembl Gene ENSG00000117614
Encoded Proteins
IDBP-94276
SYF2 homolog, RNA splicing factor (S. cerevisiae)
IDBP-94278
SYF2 homolog, RNA splicing factor (S. cerevisiae)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a nuclear protein that interacts with cyclin D-type binding-protein 1, which is thought to be a cell cycle regulator at the G1/S transition. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 1:25222679-25232502
Strand Reverse strand
Band p36.11
Transcripts
ENST00000354361 ENSP00000346330
ENST00000236273 ENSP00000236273
ENST00000474160
ENST00000476231
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 10 experimentally validated interaction(s) in this database.
Experimentally validated
Total 10 [view]
Protein-Protein 9 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0001701 in utero embryonic development
GO:0007095 mitotic G2 DNA damage checkpoint
GO:0007369 gastrulation
GO:0048568 embryonic organ development
Cellular Component
GO:0005634 nucleus
GO:0071013 catalytic step 2 spliceosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000028821
View Gene Order
ENSBTAG00000001651
Not yet available
Pathways
NETPATH
REACTOME
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.20013 Hs.594135
RefSeq NM_015484 NM_207170
HUGO
OMIM
CCDS CCDS258 CCDS259
HPRD 07386
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca