Version 5.4
Homo sapiens Protein: SNRPN
Summary
InnateDB Protein IDBP-4202.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNRPN
Protein Name SNRPN upstream reading frame
Synonyms HCERN3; PWCR; RT-LI; SM-D; sm-N; SMN; SNRNP-N; SNURF-SNRPN;
Species Homo sapiens
Ensembl Protein ENSP00000306223
InnateDB Gene IDBG-4192 (SNRPN)
Protein Structure
UniProt Annotation
Function May be involved in tissue-specific alternative RNA processing events.
Subcellular Localization Nucleus.
Disease Associations
Tissue Specificity Expressed in brain and lymphoblasts. {ECO:0000269PubMed:10318933}.
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 28 experimentally validated interaction(s) in this database.
Experimentally validated
Total 28 [view]
Protein-Protein 28 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0008380 RNA splicing
Cellular Component
GO:0005681 spliceosomal complex
GO:0030532 small nuclear ribonucleoprotein complex
Protein Structure and Domains
PDB ID
InterPro IPR001163 Ribonucleoprotein LSM domain
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 Like-Sm (LSM) domain
IPR017131 Small ribonucleoprotein associated, SmB/SmN
PFAM PF01423
PRINTS
PIRSF PIRSF037187
SMART SM00651
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt P63162
PhosphoSite PhosphoSite-P63162
TrEMBL X5DP00
UniProt Splice Variant
Entrez Gene 8926
UniGene
RefSeq
HUGO HGNC:11164
OMIM 182279
CCDS CCDS10017
HPRD 01653
IMGT
EMBL AC090602 AC090983 AC124312 AF134832 AF400432 BC000611 BC003180 BC024777 BC025178 CH471151 CR450350 J04615 KJ534946 U41303 X15892 X16163
GenPept AAA36617 AAA98969 AAD54487 AAH00611 AAH03180 AAH24777 AAH25178 AAK92481 AHW56586 CAA33901 CAA34288 CAG29346 EAW57613 EAW57614 EAW57615 EAW57616 EAW57617 EAW57618 EAW57619 EAW57620 EAW57621 EAW57622 EAW57623

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca