Version 5.4
Mus musculus Gene: Tcea1
Summary
InnateDB Gene IDBG-131692.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Tcea1
Gene Name transcription elongation factor A (SII) 1
Synonyms S-II
Species Mus musculus
Ensembl Gene ENSMUSG00000033813
Encoded Proteins
IDBP-131694
transcription elongation factor A (SII) 1
IDBP-625486
transcription elongation factor A (SII) 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000187735:
Gene Information
Type Protein coding
Genomic Location Chromosome 1:4857814-4897909
Strand Forward strand
Band A1
Transcripts
ENSMUST00000081551 ENSMUSP00000080266
ENSMUST00000165720 ENSMUSP00000129157
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 50 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 50 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0030218 erythrocyte differentiation
GO:0032784 regulation of DNA-templated transcription, elongation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000187735
View Gene Order
ENSBTAG00000003460
Not yet available
Pathways
NETPATH
REACTOME
REACT_213655
Transcription-coupled NER (TC-NER) pathway
REACT_223654
Formation of transcription-coupled NER (TC-NER) repair complex pathway
REACT_235422
Nucleotide Excision Repair pathway
REACT_226759
Formation of RNA Pol II elongation complex pathway
REACT_233397
DNA Repair pathway
REACT_226490
RNA Polymerase II Transcription Elongation pathway
REACT_255009
RNA Polymerase II Pre-transcription Events pathway
REACT_233572
Gene Expression pathway
REACT_224562
Dual incision reaction in TC-NER pathway
REACT_242255
RNA Polymerase II Transcription pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_6344
Tat-mediated HIV elongation arrest and recovery pathway
REACT_6143
Pausing and recovery of Tat-mediated HIV elongation pathway
REACT_22107
RNA Polymerase II Pre-transcription Events pathway
REACT_1845
Formation of RNA Pol II elongation complex pathway
REACT_833
RNA Polymerase II Transcription Elongation pathway
REACT_22201
Formation of HIV elongation complex in the absence of HIV Tat pathway
REACT_6244
Pausing and recovery of HIV elongation pathway
REACT_6346
Formation of HIV-1 elongation complex containing HIV-1 Tat pathway
REACT_6162
Tat-mediated elongation of the HIV-1 transcript pathway
REACT_6259
HIV elongation arrest and recovery pathway
REACT_6233
Transcription of the HIV genome pathway
REACT_6361
Late Phase of HIV Life Cycle pathway
REACT_1941
Formation of transcription-coupled NER (TC-NER) repair complex pathway
REACT_2222
Dual incision reaction in TC-NER pathway
REACT_1628
Transcription-coupled NER (TC-NER) pathway
REACT_6274
HIV Transcription Elongation pathway
REACT_1366
RNA Polymerase II Transcription pathway
REACT_6256
HIV Life Cycle pathway
REACT_6185
HIV Infection pathway
REACT_1826
Nucleotide Excision Repair pathway
REACT_71
Gene Expression pathway
REACT_116125
Disease pathway
REACT_216
DNA Repair pathway
REACT_209718
RNA Polymerase II Transcription pathway
REACT_227775
Transcription-coupled NER (TC-NER) pathway
REACT_205499
RNA Polymerase II Pre-transcription Events pathway
REACT_226022
Gene Expression pathway
REACT_212448
Nucleotide Excision Repair pathway
REACT_216254
Formation of transcription-coupled NER (TC-NER) repair complex pathway
REACT_218933
RNA Polymerase II Transcription Elongation pathway
REACT_204262
DNA Repair pathway
REACT_219298
Dual incision reaction in TC-NER pathway
REACT_206737
Formation of RNA Pol II elongation complex pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.426259 Mm.458622
RefSeq NM_001159750 NM_001159751 NM_011541
OMIM
CCDS CCDS35505 CCDS48212
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca