Version 5.4
Mus musculus Gene: Sclt1
Summary
InnateDB Gene IDBG-142104.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sclt1
Gene Name sodium channel and clathrin linker 1
Synonyms 2610207F23Rik; 4931421F20Rik
Species Mus musculus
Ensembl Gene ENSMUSG00000059834
Encoded Proteins
IDBP-142108
sodium channel and clathrin linker 1
IDBP-537593
sodium channel and clathrin linker 1
IDBP-537101
sodium channel and clathrin linker 1
IDBP-533500
sodium channel and clathrin linker 1
IDBP-542083
sodium channel and clathrin linker 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000151466:
SCLT1 acts as a linker protein between the voltage-gated sodium channel Na(v)1.8 (SCN10A; MIM 604427) and clathrin (see CLTC, MIM 118955) (Liu et al., 2005 [PubMed 15797711]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:41626717-41742514
Strand Reverse strand
Band B
Transcripts
ENSMUST00000026866 ENSMUSP00000026866
ENSMUST00000148769 ENSMUSP00000123392
ENSMUST00000146125 ENSMUSP00000117608
ENSMUST00000142908
ENSMUST00000138691 ENSMUSP00000118892
ENSMUST00000140373
ENSMUST00000154773 ENSMUSP00000120108
ENSMUST00000156279
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0008022 protein C-terminus binding
GO:0017080 sodium channel regulator activity
GO:0030276 clathrin binding
Biological Process
GO:0042384 cilium assembly
GO:0045162 clustering of voltage-gated sodium channels
Cellular Component
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0015630 microtubule cytoskeleton
GO:0045111 intermediate filament cytoskeleton
GO:0070062 extracellular vesicular exosome
GO:0071439 clathrin complex
GO:0097539 ciliary transition fiber
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000151466
View Gene Order
ENSBTAG00000013611
Not yet available
Cross-References
SwissProt
TrEMBL D6REI8
UniProt Splice Variant
Entrez Gene 67161
UniGene Mm.331001 Mm.409717
RefSeq NM_001081411 XM_006500786 XM_006500787
OMIM
CCDS CCDS38425
HPRD
IMGT
MGI ID MGI:1914411
MGI Symbol Sclt1
EMBL AC102795 AC154098 AC161235
GenPept
RNA Seq Atlas 67161

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca