Version 5.4
Mus musculus Gene: Rbpms
Summary
InnateDB Gene IDBG-148111.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbpms
Gene Name RNA binding protein gene with multiple splicing
Synonyms 2010300K22Rik; 2700019M19Rik; AU017537; hermes; RBP-MS
Species Mus musculus
Ensembl Gene ENSMUSG00000031586
Encoded Proteins
IDBP-148113
RNA binding protein gene with multiple splicing
IDBP-148115
RNA binding protein gene with multiple splicing
IDBP-148117
RNA binding protein gene with multiple splicing
IDBP-788373
RNA binding protein gene with multiple splicing
IDBP-788374
RNA binding protein gene with multiple splicing
IDBP-788375
RNA binding protein gene with multiple splicing
IDBP-788376
RNA binding protein gene with multiple splicing
IDBP-788377
RNA binding protein gene with multiple splicing
IDBP-788379
RNA binding protein gene with multiple splicing
IDBP-788381
RNA binding protein gene with multiple splicing
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000157110:
This gene encodes a member of the RRM family of RNA-binding proteins. The RRM domain is between 80-100 amino acids in length and family members contain one to four copies of the domain. The RRM domain consists of two short stretches of conserved sequence called RNP1 and RNP2, as well as a few highly conserved hydrophobic residues. The protein encoded by this gene has a single, putative RRM domain in its N-terminus. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
This gene encodes a member of the RNA recognition motif family of RNA-binding proteins. The RNA recognition motif is between 80-100 amino acids in length and family members contain one to four copies of the motif. The RNA recognition motif consists of two short stretches of conserved sequence, as well as a few highly conserved hydrophobic residues. The encoded protein has a single, putative RNA recognition motif in its N-terminus. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2013]
Gene Information
Type Protein coding
Genomic Location Chromosome 8:33782643-33929863
Strand Reverse strand
Band A4
Transcripts
ENSMUST00000053251 ENSMUSP00000055813
ENSMUST00000033994 ENSMUSP00000033994
ENSMUST00000033995 ENSMUSP00000033995
ENSMUST00000182987 ENSMUSP00000138483
ENSMUST00000182256 ENSMUSP00000138140
ENSMUST00000183336 ENSMUSP00000138533
ENSMUST00000182926 ENSMUSP00000138361
ENSMUST00000182184
ENSMUST00000183122
ENSMUST00000183062 ENSMUSP00000138726
ENSMUST00000183088 ENSMUSP00000138420
ENSMUST00000182871
ENSMUST00000191473 ENSMUSP00000140387
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 46 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 46 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0008143 poly(A) binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0060391 positive regulation of SMAD protein import into nucleus
GO:2001141 regulation of RNA biosynthetic process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000157110
View Gene Order
ENSBTAG00000033727
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene
RefSeq NM_001042674 NM_001042675 NM_001286168 NM_019733 XM_006509037
OMIM
CCDS CCDS40317 CCDS40318 CCDS72112
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca