Version 5.4
Mus musculus Gene: Sec16a
Summary
InnateDB Gene IDBG-149259.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sec16a
Gene Name SEC16 homolog A (S. cerevisiae)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000026924
Encoded Proteins
IDBP-149263
SEC16 homolog A (S. cerevisiae)
IDBP-252507
SEC16 homolog A (S. cerevisiae)
IDBP-535153
SEC16 homolog A (S. cerevisiae)
IDBP-536742
SEC16 homolog A (S. cerevisiae)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000148396:
This gene encodes a protein that forms part of the Sec16 complex. This protein has a role in protein transport from the endoplasmic reticulum (ER) to the Golgi and mediates COPII vesicle formation at the transitional ER. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Feb 2013]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:26409431-26445216
Strand Reverse strand
Band A3
Transcripts
ENSMUST00000091252 ENSMUSP00000088796
ENSMUST00000114082 ENSMUSP00000109716
ENSMUST00000156442 ENSMUSP00000122255
ENSMUST00000149010
ENSMUST00000154486
ENSMUST00000148306
ENSMUST00000153996 ENSMUSP00000121179
ENSMUST00000155252
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 22 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 22 [view]
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0007029 endoplasmic reticulum organization
GO:0021762 substantia nigra development
GO:0048208 COPII vesicle coating
Cellular Component
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000148396
View Gene Order
ENSBTAG00000023933
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
NetPath_9
TNFalpha pathway
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.206371
RefSeq NM_153125 XM_006497909 XM_006497910 XM_006497911 XM_006497912
OMIM
CCDS CCDS38085
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca