Mus musculus Gene: Ddx6
Summary
InnateDB Gene IDBG-157702.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ddx6
Gene Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Synonyms 1110001P04Rik; E230023J21Rik; HLR2; mRCK/P54; p54; rck;
Species Mus musculus
Ensembl Gene ENSMUSG00000032097
Encoded Proteins
DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000110367:
This gene encodes a member of the DEAD box protein family. The protein is an RNA helicase found in P-bodies and stress granules, and functions in translation suppression and mRNA degradation. It is required for microRNA-induced gene silencing. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Mar 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 9:44604892-44640731
Strand Forward strand
Band A5.2
Transcripts
ENSMUST00000170489 ENSMUSP00000128421
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 8 experimentally validated interaction(s) in this database.
They are also associated with 30 interaction(s) predicted by orthology.
Experimentally validated
Total 8 [view]
Protein-Protein 8 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 30 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008026 ATP-dependent helicase activity
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006200 ATP catabolic process
GO:0033962 cytoplasmic mRNA processing body assembly
Cellular Component
GO:0000932 cytoplasmic mRNA processing body
GO:0005737 cytoplasm
GO:0010494 cytoplasmic stress granule
GO:0016020 membrane
GO:0016442 RISC complex
GO:0043231 intracellular membrane-bounded organelle
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
Not yet available
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
REACTOME
mRNA decay by 5' to 3' exoribonuclease pathway
Gene Expression pathway
Deadenylation-dependent mRNA decay pathway
KEGG
RNA degradation pathway
INOH
PID BIOCARTA
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
EGFR1 pathway
REACTOME
mRNA decay by 5' to 3' exoribonuclease pathway
Deadenylation-dependent mRNA decay pathway
Gene Expression pathway
KEGG
RNA degradation pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt P54823
TrEMBL
UniProt Splice Variant
Entrez Gene 13209
UniGene Mm.267061 Mm.416230 Mm.470466
RefSeq NM_001110826 NM_007841 NM_181324
OMIM
CCDS CCDS23116
HPRD
IMGT
MGI ID MGI:104976
MGI Symbol Ddx6
EMBL AF038995 AK054144 AK148483 BC021452 D50494
GenPept AAB94769 AAH21452 BAA09088 BAC35670 BAE28578
RNA Seq Atlas 13209