Version 5.4
Mus musculus Gene: Psip1
Summary
InnateDB Gene IDBG-160130.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Psip1
Gene Name PC4 and SFRS1 interacting protein 1
Synonyms AA408851; AU015605; Dfs70; Ledgfa; Ledgfb; Psip2
Species Mus musculus
Ensembl Gene ENSMUSG00000028484
Encoded Proteins
IDBP-160132
PC4 and SFRS1 interacting protein 1
IDBP-267153
PC4 and SFRS1 interacting protein 1
IDBP-267155
PC4 and SFRS1 interacting protein 1
IDBP-533396
PC4 and SFRS1 interacting protein 1
IDBP-537933
PC4 and SFRS1 interacting protein 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000164985:
Gene Information
Type Protein coding
Genomic Location Chromosome 4:83455680-83486459
Strand Reverse strand
Band C3
Transcripts
ENSMUST00000030207 ENSMUSP00000030207
ENSMUST00000107215 ENSMUSP00000102833
ENSMUST00000107214 ENSMUSP00000102832
ENSMUST00000152382
ENSMUST00000126706 ENSMUSP00000120799
ENSMUST00000144349
ENSMUST00000130626 ENSMUSP00000121950
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 9 experimentally validated interaction(s) in this database.
They are also associated with 35 interaction(s) predicted by orthology.
Experimentally validated
Total 9 [view]
Protein-Protein 9 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 35 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0001105 RNA polymerase II transcription coactivator activity
GO:0003682 chromatin binding
GO:0005515 protein binding
GO:0033613 activating transcription factor binding
GO:0044822 poly(A) RNA binding
GO:0097100 supercoiled DNA binding
Biological Process
GO:0000395 mRNA 5'-splice site recognition
GO:0006351 transcription, DNA-templated
GO:0006979 response to oxidative stress
GO:0009408 response to heat
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005720 nuclear heterochromatin
GO:0034399 nuclear periphery
GO:0035327 transcriptionally active chromatin
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000164985
View Gene Order
ENSBTAG00000007872
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_9406
APOBEC3G mediated resistance to HIV-1 infection pathway
REACT_7991
Vpr-mediated nuclear import of PICs pathway
REACT_9058
2-LTR circle formation pathway
REACT_6866
Autointegration results in viral DNA circles pathway
REACT_6918
Integration of provirus pathway
REACT_6266
Early Phase of HIV Life Cycle pathway
REACT_6757
Interactions of Vpr with host cellular proteins pathway
REACT_6256
HIV Life Cycle pathway
REACT_6185
HIV Infection pathway
REACT_6288
Host Interactions of HIV factors pathway
REACT_8990
Integration of viral DNA into host genomic DNA pathway
REACT_116125
Disease pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q99JF8
TrEMBL A2BI12 F6RB63
UniProt Splice Variant
Entrez Gene 101739
UniGene Mm.105331 Mm.455389
RefSeq NM_001290527 NM_133948 XM_006537543 XM_006537544
OMIM
CCDS CCDS18299 CCDS71412
HPRD
IMGT
MGI ID MGI:2142116
MGI Symbol Psip1
EMBL AF339082 AF339083 AJ308965 AJ308966 AK011572 AK139598 AK161426 AK169600 BC002260 BC043079 BC052177 BX682545
GenPept AAH02260 AAH43079 AAH52177 AAO32949 AAO32950 BAB27707 BAE24079 BAE36388 BAE41251 CAC34944 CAC34945 CAM20466 CAM20467
RNA Seq Atlas 101739

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca