Version 5.4
Homo sapiens Gene: SCAF4
Summary
InnateDB Gene IDBG-1636.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SCAF4
Gene Name SR-related CTD-associated factor 4
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000156304
Encoded Proteins
IDBP-1638
SR-related CTD-associated factor 4
IDBP-229688
SR-related CTD-associated factor 4
IDBP-361963
SR-related CTD-associated factor 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene likely encodes a member of the arginine/serine-rich splicing factor family. A similar protein in Rat appears to bind the large subunit of RNA polymerase II and provide a link between transcription and pre-mRNA splicing. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 21:31671033-31732075
Strand Reverse strand
Band q22.11
Transcripts
ENST00000286835 ENSP00000286835
ENST00000399804 ENSP00000382703
ENST00000434667 ENSP00000402377
ENST00000467731
ENST00000472318
ENST00000485790
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 24 experimentally validated interaction(s) in this database.
Experimentally validated
Total 24 [view]
Protein-Protein 24 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0044822 poly(A) RNA binding
Biological Process
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000022983
View Gene Order
ENSBTAG00000018855
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.17255
RefSeq NM_001145444 NM_001145445 NM_020706 XM_006724035 XM_006724036
HUGO
OMIM
CCDS CCDS33537 CCDS46644 CCDS54482
HPRD 11551
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca