Version 5.4
Mus musculus Gene: Chtop
Summary
InnateDB Gene IDBG-167607.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Chtop
Gene Name chromatin target of PRMT1
Synonyms 2500003M10Rik; Fop; Srag
Species Mus musculus
Ensembl Gene ENSMUSG00000001017
Encoded Proteins
IDBP-167609
RIKEN cDNA 2500003M10 gene
IDBP-167611
RIKEN cDNA 2500003M10 gene
IDBP-167613
RIKEN cDNA 2500003M10 gene
IDBP-266863
RIKEN cDNA 2500003M10 gene
IDBP-266867
RIKEN cDNA 2500003M10 gene
IDBP-266869
RIKEN cDNA 2500003M10 gene
IDBP-266871
RIKEN cDNA 2500003M10 gene
IDBP-536503
RIKEN cDNA 2500003M10 gene
IDBP-538592
RIKEN cDNA 2500003M10 gene
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000160679:
This gene encodes a small nuclear protein that is characterized by a arginine and glycine rich region. The encoded protein may be involved in cell cycle progression. This protein interacts with protein arginine methyltransferases and plays a role in the activation of estradiol-dependent transcription. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:90498956-90509498
Strand Reverse strand
Band F1
Transcripts
ENSMUST00000076639 ENSMUSP00000075936
ENSMUST00000049937 ENSMUSP00000061800
ENSMUST00000001043 ENSMUSP00000001043
ENSMUST00000107346 ENSMUSP00000102969
ENSMUST00000107344 ENSMUSP00000102967
ENSMUST00000107343 ENSMUSP00000102966
ENSMUST00000107342 ENSMUSP00000102965
ENSMUST00000146740 ENSMUSP00000116945
ENSMUST00000131868 ENSMUSP00000123448
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 13 experimentally validated interaction(s) in this database.
They are also associated with 8 interaction(s) predicted by orthology.
Experimentally validated
Total 13 [view]
Protein-Protein 12 [view]
Protein-DNA 0
Protein-RNA 1 [view]
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 8 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006406 mRNA export from nucleus
GO:0032781 positive regulation of ATPase activity
GO:0051096 positive regulation of helicase activity
Cellular Component
GO:0000346 transcription export complex
GO:0005730 nucleolus
GO:0016607 nuclear speck
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000160679
View Gene Order
ENSBTAG00000005166
Not yet available
Cross-References
SwissProt
TrEMBL D3YZA1
UniProt Splice Variant
Entrez Gene 66511
UniGene Mm.154136 Mm.391189 Mm.391202 Mm.396931 Mm.475428 Mm.486205
RefSeq NM_023215 XM_006501886 XM_006501887 XM_006501888 XM_006501889 XM_006501890 XM_006501891 XM_006501892
OMIM
CCDS CCDS17532
HPRD
IMGT
MGI ID MGI:1913761
MGI Symbol Chtop
EMBL AC160552
GenPept
RNA Seq Atlas 66511

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca