Version 5.4
Homo sapiens Gene: SS18
Summary
InnateDB Gene IDBG-1783.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SS18
Gene Name synovial sarcoma translocation, chromosome 18
Synonyms SSXT; SYT
Species Homo sapiens
Ensembl Gene ENSG00000141380
Encoded Proteins
IDBP-1785
synovial sarcoma translocation, chromosome 18
IDBP-1787
synovial sarcoma translocation, chromosome 18
IDBP-366034
synovial sarcoma translocation, chromosome 18
IDBP-594723
synovial sarcoma translocation, chromosome 18
IDBP-598501
synovial sarcoma translocation, chromosome 18
IDBP-726052
IDBP-725988
IDBP-726489
IDBP-725843
IDBP-726348
IDBP-726195
IDBP-725852
IDBP-725605
IDBP-725551
IDBP-725578
IDBP-725704
IDBP-726926
IDBP-726442
IDBP-727164
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 18:26016253-26091217
Strand Reverse strand
Band q11.2
Transcripts
ENST00000269138 ENSP00000269138
ENST00000269137 ENSP00000269137
ENST00000415083 ENSP00000414516
ENST00000542420 ENSP00000438066
ENST00000539244 ENSP00000441760
ENST00000584083 ENSP00000463943
ENST00000580003
ENST00000583595
ENST00000579640 ENSP00000462363
ENST00000578595
ENST00000578954 ENSP00000464664
ENST00000580642 ENSP00000462104
ENST00000580958
ENST00000577636 ENSP00000463933
ENST00000581021 ENSP00000463586
ENST00000582092
ENST00000585241
ENST00000577572 ENSP00000463802
ENST00000579061 ENSP00000462766
ENST00000581570 ENSP00000464556
ENST00000578700 ENSP00000464673
ENST00000582792 ENSP00000463928
ENST00000585121 ENSP00000462838
ENST00000580751 ENSP00000464049
ENST00000577751
ENST00000582448 ENSP00000464609
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 40 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 40 [view]
Protein-Protein 38 [view]
Protein-DNA 2 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
Biological Process
GO:0000226 microtubule cytoskeleton organization
GO:0000902 cell morphogenesis
GO:0006351 transcription, DNA-templated
GO:0007010 cytoskeleton organization
GO:0035556 intracellular signal transduction
GO:0042493 response to drug
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048013 ephrin receptor signaling pathway
Cellular Component
GO:0005634 nucleus
GO:0005881 cytoplasmic microtubule
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000037013
View Gene Order
ENSBTAG00000011531
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.129261 Hs.604782 Hs.707065
RefSeq NM_001007559 NM_005637 XM_005258334 XM_006722527
HUGO
OMIM
CCDS CCDS32807 CCDS54183
HPRD 02559
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca