Version 5.4
Mus musculus Gene: 5330417C22Rik
Summary
InnateDB Gene IDBG-187475.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol 5330417C22Rik
Gene Name RIKEN cDNA 5330417C22 gene
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000040412
Encoded Proteins
IDBP-187477
RIKEN cDNA 5330417C22 gene
IDBP-268376
RIKEN cDNA 5330417C22 gene
IDBP-268378
RIKEN cDNA 5330417C22 gene
IDBP-788280
RIKEN cDNA 5330417C22 gene
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000116299:
Expression of this gene is induced by estrogen and the encoded protein has been characterized as a transmembrane protein. The encoded protein has been found in to correlate with survival in certain carcinomas (PMID: 21102415) and may be important for cellular response to stress (PMID: 21072319). Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:108455694-108536536
Strand Reverse strand
Band F3
Transcripts
ENSMUST00000048012 ENSMUSP00000040128
ENSMUST00000106626 ENSMUSP00000102237
ENSMUST00000106625 ENSMUSP00000102236
ENSMUST00000140357
ENSMUST00000148493
ENSMUST00000148237
ENSMUST00000185128 ENSMUSP00000138870
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0044822 poly(A) RNA binding
Biological Process
GO:0009267 cellular response to starvation
GO:0016236 macroautophagy
GO:0044090 positive regulation of vacuole organization
GO:2000786 positive regulation of autophagic vacuole assembly
GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
Cellular Component
GO:0005764 lysosome
GO:0005765 lysosomal membrane
GO:0005770 late endosome
GO:0005802 trans-Golgi network
GO:0005887 integral component of plasma membrane
GO:0031902 late endosome membrane
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000116299
View Gene Order
ENSBTAG00000001136
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.316890 Mm.400506
RefSeq NM_001033304 XM_006501411 XM_006501412 XM_006501414 XM_006501415
OMIM
CCDS CCDS17761
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca