Version 5.4
Mus musculus Gene: Limd1
Summary
InnateDB Gene IDBG-206305.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Limd1
Gene Name LIM domains containing 1
Synonyms AW822033; D9Ertd192e
Species Mus musculus
Ensembl Gene ENSMUSG00000025239
Encoded Proteins
IDBP-206307
LIM domains containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000144791:
Gene Information
Type Protein coding
Genomic Location Chromosome 9:123478701-123521548
Strand Forward strand
Band F4
Transcripts
ENSMUST00000026269 ENSMUSP00000026269
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 6 experimentally validated interaction(s) in this database.
They are also associated with 14 interaction(s) predicted by orthology.
Experimentally validated
Total 6 [view]
Protein-Protein 6 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 14 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
Biological Process
GO:0001666 response to hypoxia
GO:0002076 osteoblast development
GO:0006351 transcription, DNA-templated
GO:0007010 cytoskeleton organization
GO:0008360 regulation of cell shape
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0033962 cytoplasmic mRNA processing body assembly
GO:0035195 gene silencing by miRNA
GO:0035331 negative regulation of hippo signaling
GO:0045668 negative regulation of osteoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:2000637 positive regulation of gene silencing by miRNA
Cellular Component
GO:0000932 cytoplasmic mRNA processing body
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005912 adherens junction
GO:0005925 focal adhesion
GO:0016442 RISC complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000144791
View Gene Order
ENSBTAG00000026097
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
NetPath_4
EGFR1 pathway
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt Q9QXD8
TrEMBL
UniProt Splice Variant
Entrez Gene 29806
UniGene Mm.10987 Mm.480646
RefSeq NM_013860
OMIM
CCDS CCDS23660
HPRD
IMGT
MGI ID MGI:1352502
MGI Symbol Limd1
EMBL AJ132409 AK004806 AK047198 BC056449
GenPept AAH56449 BAB23578 BAC32988 CAB63700
RNA Seq Atlas 29806

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca