Homo sapiens Gene: LMO7
Summary
InnateDB Gene IDBG-38674.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LMO7
Gene Name LIM domain 7
Synonyms FBX20; FBXO20; LOMP;
Species Homo sapiens
Ensembl Gene ENSG00000136153
Encoded Proteins
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
LIM domain 7
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein containing a calponin homology (CH) domain, a PDZ domain, and a LIM domain, and may be involved in protein-protein interactions. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene, however, the full-length nature of some variants is not known. [provided by RefSeq, Jan 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:75620434-75859870
Strand Forward strand
Band q22.2
Transcripts
ENST00000357063 ENSP00000349571
ENST00000341547 ENSP00000342112
ENST00000377534 ENSP00000366757
ENST00000377499 ENSP00000366719
ENST00000321797 ENSP00000317802
ENST00000447038 ENSP00000388955
ENST00000465309
ENST00000465261 ENSP00000433352
ENST00000497947 ENSP00000431271
ENST00000489941 ENSP00000431636
ENST00000485987
ENST00000482116
ENST00000467686
ENST00000533299
ENST00000533305
ENST00000534657 ENSP00000434943
ENST00000526202 ENSP00000431129
ENST00000526371 ENSP00000432269
ENST00000526528 ENSP00000434201
ENST00000525373 ENSP00000431896
ENST00000532785
ENST00000532377
ENST00000524651 ENSP00000433591
ENST00000525107 ENSP00000435296
ENST00000525914 ENSP00000434083
ENST00000533809 ENSP00000475811
ENST00000605961
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 26 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 26 [view]
Protein-Protein 25 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0008270 zinc ion binding
GO:0042805 actinin binding
Biological Process
GO:0016337 single organismal cell-cell adhesion
GO:0016567 protein ubiquitination
Cellular Component
GO:0000151 ubiquitin ligase complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005913 cell-cell adherens junction
GO:0016324 apical plasma membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
Not yet available
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
REACTOME
KEGG
Adherens junction pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q8WWI1
TrEMBL E9PK58 E9PLU6
UniProt Splice Variant
Entrez Gene 4008
UniGene Hs.207631 Hs.612198 Hs.705567
RefSeq NM_005358 XM_005266396 NM_015842 XM_005266389 XM_005266397
HUGO HGNC:6646
OMIM 604362
CCDS CCDS9454 CCDS53876
HPRD 05078
IMGT
EMBL AB020665 AF092554 AF092555 AF092556 AF092557 AF144237 AF174600 AF330045 AL137121 AL137244 AL137782 AL359392 U90654
GenPept AAB86592 AAC96299 AAC96300 AAD33924 AAF04521 AAL37480 BAA74881 CAI12422 CAI39480 CAI40007 CAI40209
RNA Seq Atlas 4008