Version 5.4
Homo sapiens Gene: LMO7
Summary
InnateDB Gene IDBG-38674.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LMO7
Gene Name LIM domain 7
Synonyms FBX20; FBXO20; LOMP
Species Homo sapiens
Ensembl Gene ENSG00000136153
Encoded Proteins
IDBP-38676
LIM domain 7
IDBP-38678
LIM domain 7
IDBP-38682
LIM domain 7
IDBP-38684
LIM domain 7
IDBP-38686
LIM domain 7
IDBP-370875
LIM domain 7
IDBP-587960
LIM domain 7
IDBP-586848
LIM domain 7
IDBP-585509
LIM domain 7
IDBP-588197
LIM domain 7
IDBP-590147
LIM domain 7
IDBP-589163
LIM domain 7
IDBP-594877
LIM domain 7
IDBP-599880
LIM domain 7
IDBP-598289
LIM domain 7
IDBP-600209
LIM domain 7
IDBP-599180
LIM domain 7
IDBP-808788
LIM domain 7
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein containing a calponin homology (CH) domain, a PDZ domain, and a LIM domain, and may be involved in protein-protein interactions. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene, however, the full-length nature of some variants is not known. [provided by RefSeq, Jan 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:75620434-75859870
Strand Forward strand
Band q22.2
Transcripts
ENST00000357063 ENSP00000349571
ENST00000341547 ENSP00000342112
ENST00000377534 ENSP00000366757
ENST00000377499 ENSP00000366719
ENST00000321797 ENSP00000317802
ENST00000447038 ENSP00000388955
ENST00000465309
ENST00000465261 ENSP00000433352
ENST00000497947 ENSP00000431271
ENST00000489941 ENSP00000431636
ENST00000485987
ENST00000482116
ENST00000467686
ENST00000533299
ENST00000533305
ENST00000534657 ENSP00000434943
ENST00000526202 ENSP00000431129
ENST00000526371 ENSP00000432269
ENST00000526528 ENSP00000434201
ENST00000525373 ENSP00000431896
ENST00000532785
ENST00000532377
ENST00000524651 ENSP00000433591
ENST00000525107 ENSP00000435296
ENST00000525914 ENSP00000434083
ENST00000533809 ENSP00000475811
ENST00000605961
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 26 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 26 [view]
Protein-Protein 25 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0008270 zinc ion binding
GO:0042805 actinin binding
Biological Process
GO:0016337 single organismal cell-cell adhesion
GO:0016567 protein ubiquitination
Cellular Component
GO:0000151 ubiquitin ligase complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005913 cell-cell adherens junction
GO:0016324 apical plasma membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000033060
View Gene Order
ENSBTAG00000010693
Not yet available
Pathways
NETPATH
REACTOME
KEGG
hsa04520
Adherens junction pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL E9PJ10
UniProt Splice Variant
Entrez Gene 4008
UniGene Hs.207631 Hs.612198 Hs.705567
RefSeq NM_005358 NM_015842 XM_005266389 XM_005266396 XM_005266397
HUGO HGNC:6646
OMIM 604362
CCDS CCDS53876 CCDS9454
HPRD 05078
IMGT
EMBL AL137121 AL137244 AL137782 AL359392
GenPept
RNA Seq Atlas 4008

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca