Version 5.4
Homo sapiens Gene: OTUD4
Summary
InnateDB Gene IDBG-39849.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol OTUD4
Gene Name OTU domain containing 4
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000164164
Encoded Proteins
IDBP-378183
OTU domain containing 4
IDBP-378186
OTU domain containing 4
IDBP-485031
OTU domain containing 4
IDBP-476989
OTU domain containing 4
IDBP-478899
OTU domain containing 4
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Alternatively spliced transcript variants have been found for this gene. The smaller protein isoform encoded by the shorter transcript variant is found only in HIV-1 infected cells. [provided by RefSeq, Jul 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:145110838-145180161
Strand Reverse strand
Band q31.21
Transcripts
ENST00000454497 ENSP00000409279
ENST00000447906 ENSP00000395487
ENST00000455611
ENST00000509517
ENST00000514973 ENSP00000425972
ENST00000505976
ENST00000509620 ENSP00000424192
ENST00000504501 ENSP00000423453
ENST00000509985
ENST00000504331
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 34 experimentally validated interaction(s) in this database.
Experimentally validated
Total 34 [view]
Protein-Protein 33 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 1 [view]
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0004843 ubiquitin-specific protease activity
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006508 proteolysis
GO:0071108 protein K48-linked deubiquitination
Cellular Component
GO:0005575 cellular_component
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000036990
View Gene Order
ENSBTAG00000019857
Not yet available
Cross-References
SwissProt
TrEMBL D6RA27 D6RI06
UniProt Splice Variant
Entrez Gene 54726
UniGene Hs.270851
RefSeq NM_001102653 NM_017493 XM_005263079 XM_005263080 XM_005263081
HUGO HGNC:24949
OMIM 611744
CCDS CCDS3764 CCDS47139
HPRD 11033
IMGT
EMBL AC096757
GenPept
RNA Seq Atlas 54726

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca