InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Gene: RPS16

Summary

InnateDB Gene

IDBG-50388.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

RPS16

Gene Name

ribosomal protein S16

Synonyms

S16

Species

Homo sapiens

Ensembl Gene

ENSG00000105193

Encoded Proteins

IDBP-50390

ribosomal protein S16

IDBP-50392

ribosomal protein S16

IDBP-765290

IDBP-760580

IDBP-765451

IDBP-765169

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S9P family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 19:39433207-39435948

Strand

Reverse strand

Band

q13.2

Transcripts

ENST00000339471	ENSP00000367806
ENST00000251453	ENSP00000251453
ENST00000599705	ENSP00000471983
ENST00000601390
ENST00000595386
ENST00000599539	ENSP00000473220
ENST00000602153	ENSP00000468957
ENST00000601655	ENSP00000472231

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 161 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.

Experimentally validated
Total	161 [view]
Protein-Protein	158 [view]
Protein-DNA	3 [view]
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	2 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0044822	poly(A) RNA binding

Biological Process

GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0006364	rRNA processing
GO:0006412	translation
GO:0006413	translational initiation
GO:0006414	translational elongation
GO:0006415	translational termination
GO:0006614	SRP-dependent cotranslational protein targeting to membrane
GO:0010467	gene expression
GO:0016032	viral process
GO:0016070	RNA metabolic process
GO:0016071	mRNA metabolic process
GO:0019058	viral life cycle
GO:0019083	viral transcription
GO:0042274	ribosomal small subunit biogenesis
GO:0044267	cellular protein metabolic process

Cellular Component

GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0016020	membrane
GO:0022627	cytosolic small ribosomal subunit
GO:0070062	extracellular vesicular exosome