Version 5.4
| Mus musculus Gene: Col6a5 | |||||||
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| Summary | |||||||
| InnateDB Gene | IDBG-606363.3 | ||||||
| Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||
| Gene Symbol | Col6a5 | ||||||
| Gene Name | collagen, type VI, alpha 5 | ||||||
| Synonyms | |||||||
| Species | Mus musculus | ||||||
| Ensembl Gene | ENSMUSG00000091345 | ||||||
| Encoded Proteins |
collagen, type VI, alpha 5
collagen, type VI, alpha 5
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| Protein Structure |
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| Useful resources | Stemformatics EHFPI ImmGen | ||||||
| Entrez Gene | |||||||
| Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000172752:
The protein encoded by this gene is a collagen that contains N- and C-terminal von Willebrand factor A-like domains. The encoded protein may interact with the alpha 1 and alpha 2 chains of collagen VI to form the complete collagen VI trimer. Sequence polymorphisms in this gene have been linked to atopic dermatitis (eczema). Two transcript variants, one protein-coding and the other probably not protein-coding, have been found for this gene.[provided by RefSeq, Jun 2010] |
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| Gene Information | |||||||
| Type | Protein coding | ||||||
| Genomic Location | Chromosome 9:105856078-105960643 | ||||||
| Strand | Reverse strand | ||||||
| Band | F1 | ||||||
| Transcripts |
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| Interactions | |||||||
| Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
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| Gene Ontology | |||||||
Molecular Function |
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| Biological Process |
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| Cellular Component |
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| Orthologs | |||||||
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Species
Homo sapiens
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Gene ID
Gene Order
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| Pathways | |||||||
| NETPATH | |||||||
| REACTOME |
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Collagen degradation pathway
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| KEGG |
ECM-receptor interaction pathway
Focal adhesion pathway
Protein digestion and absorption pathway
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| INOH | |||||||
| PID NCI | |||||||
| Pathway Predictions based on Human Orthology Data | |||||||
| NETPATH | |||||||
| REACTOME |
Integrin cell surface interactions pathway
Signaling by PDGF pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen biosynthesis and modifying enzymes pathway
Collagen degradation pathway
NCAM1 interactions pathway
NCAM signaling for neurite out-growth pathway
Developmental Biology pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Axon guidance pathway
Signal Transduction pathway
ECM proteoglycans pathway
Collagen formation pathway
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| KEGG |
ECM-receptor interaction pathway
Focal adhesion pathway
Protein digestion and absorption pathway
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| INOH | |||||||
| PID NCI | |||||||
| Cross-References | |||||||
| SwissProt | A6H584 | ||||||
| TrEMBL | |||||||
| UniProt Splice Variant | |||||||
| Entrez Gene | 665033 | ||||||
| UniGene | Mm.39826 | ||||||
| RefSeq | NM_001167923 | ||||||
| OMIM | |||||||
| CCDS | |||||||
| HPRD | |||||||
| IMGT | |||||||
| MGI ID | MGI:3648134 | ||||||
| MGI Symbol | Col6a5 | ||||||
| EMBL | AC119951 AC120386 AM748256 AM748257 AM748258 | ||||||
| GenPept | CAO01891 CAO01892 CAO01893 | ||||||
| RNA Seq Atlas | 665033 | ||||||