Version 5.4
Bos taurus Gene: SCNM1
Summary
InnateDB Gene IDBG-633192.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SCNM1
Gene Name Sodium channel modifier 1
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000018070
Encoded Proteins
IDBP-684878
Sodium channel modifier 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000163156:
This locus represents naturally occurring read-through transcription between the neighboring TNFAIP8L2 (tumor necrosis factor, alpha-induced protein 8-like 2) and SCNM1 (sodium channel modifier 1) genes on chromosome 1. The read-through transcript encodes a protein that shares sequence identity with the downstream gene product but its N-terminal region is shorter due to alternate exon use, compared to the downstream gene. [provided by RefSeq, Mar 2011] SCNM1 is a zinc finger protein and putative splicing factor. In mice, Scnm1 modifies phenotypic expression of Scn8a (MIM 600702) mutations (Buchner et al., 2003 [PubMed 12920299]).[supplied by OMIM, Oct 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:19684361-19686905
Strand Reverse strand
Band
Transcripts
ENSBTAT00000024057 ENSBTAP00000024057
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0019899 enzyme binding
GO:0046872 metal ion binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0016607 nuclear speck
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
ENSG00000163156
View Gene Order
ENSMUSG00000092607
View Gene Order
Cross-References
SwissProt Q3ZBR0
TrEMBL
UniProt Splice Variant
Entrez Gene 505644
UniGene
RefSeq NM_001034254 XM_005203851
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL BC103163
GenPept AAI03164
RNA Seq Atlas 505644

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca