Version 5.4
Bos taurus Gene: PCDH9
Summary
InnateDB Gene IDBG-648377.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PCDH9
Gene Name Uncharacterized protein
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000019340
Encoded Proteins
IDBP-701133
protocadherin 9
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000184226:
This gene encodes a member of the protocadherin family, and cadherin superfamily, of transmembrane proteins containing cadherin domains. These proteins mediate cell adhesion in neural tissues in the presence of calcium. The encoded protein may be involved in signaling at neuronal synaptic junctions. Sharing a characteristic with other protocadherin genes, this gene has a notably large exon that encodes multiple cadherin domains and a transmembrane region. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Nov 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 12:40887255-40890353
Strand Reverse strand
Band
Transcripts
ENSBTAT00000025758 ENSBTAP00000025758
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
GO:0005515 protein binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030426 growth cone
GO:0044291 cell-cell contact zone
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
ENSG00000184226
View Gene Order
ENSMUSG00000055421
View Gene Order
Cross-References
SwissProt
TrEMBL F1MMW5
UniProt Splice Variant
Entrez Gene 509935
UniGene
RefSeq XM_002691876 XM_002691877 XM_002700935 XM_003582870 XM_003582871 XM_003586718 XM_005194158 XM_005194159 XM_005194160 XM_005213831 XM_005213832 XM_005213833
HUGO HGNC:8661
OMIM
CCDS
HPRD
IMGT
EMBL DAAA02033344
GenPept
RNA Seq Atlas 509935

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca