Homo sapiens Protein: COL4A6
Summary
InnateDB Protein IDBP-81942.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL4A6
Protein Name collagen, type IV, alpha 6
Synonyms CXDELq22.3; DELXq22.3; DFNX6;
Species Homo sapiens
Ensembl Protein ENSP00000334733
InnateDB Gene IDBG-81938 (COL4A6)
Protein Structure
UniProt Annotation
Function Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.
Subcellular Localization Secreted, extracellular space, extracellular matrix, basement membrane.
Disease Associations Note=Deletions covering the N-terminal regions of COL4A5 and COL4A6, which are localized in a head-to-head manner, are found in the chromosome Xq22.3 centromeric deletion syndrome. This results in a phenotype with features of diffuse leiomyomatosis and Alport syndrome (DL-ATS).Deafness, X-linked, 6 (DFNX6) [MIM:300914]: A non- syndromic form of sensorineural hearing loss with prelingual onset. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. {ECO:0000269PubMed:23714752}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005201 extracellular matrix structural constituent
Biological Process
GO:0007155 cell adhesion
GO:0022617 extracellular matrix disassembly
GO:0030198 extracellular matrix organization
GO:0030574 collagen catabolic process
Cellular Component
GO:0005576 extracellular region
GO:0005581 collagen trimer
GO:0005587 collagen type IV trimer
GO:0005788 endoplasmic reticulum lumen
Protein Structure and Domains
PDB ID
InterPro IPR001442 Collagen IV, non-collagenous
IPR008160 Collagen triple helix repeat
IPR016187 C-type lectin fold
PFAM PF01413
PF01391
PRINTS
PIRSF
SMART SM00111
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q14031
PhosphoSite PhosphoSite-Q14031
TrEMBL B4DU54
UniProt Splice Variant
Entrez Gene 1288
UniGene Hs.592785
RefSeq NP_378667
HUGO HGNC:2208
OMIM 303631
CCDS CCDS14542
HPRD 02364
IMGT
EMBL AK300502 AL031177 AL034369 AL109943 AL136080 CH471120 D21337 L22763 U04845 U46959 U46960 U46961 U46962 U46963 U46964 U46965 U46966 U46967 U46968 U46969 U46970 U46971 U46972 U46973 U46974 U46975 U46976 U46977 U46978 U46979 U46980 U46981 U46982 U46983 U46984 U46985 U46986 U46987 U46988 U46989 U46990 U46991 U46992 U46993 U46994 U46995 U46996 U46997 U46998 U46999 U47000 U47001 U47002 U47003 U47004
GenPept AAA16338 AAA19569 AAB19038 AAB19039 BAA04809 BAG62216 CAI40756 CAI40758 CAI42045 CAI42047 CAI42993 CAI42995 CAI43139 CAI43140 EAX02688