Version 5.4
Homo sapiens Gene: C15orf48
Summary
InnateDB Gene IDBG-10436.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol C15orf48
Gene Name chromosome 15 open reading frame 48
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000166920
Encoded Proteins
IDBP-10438
chromosome 15 open reading frame 48
IDBP-237058
chromosome 15 open reading frame 48
IDBP-591958
chromosome 15 open reading frame 48
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene was first identified in a study of human esophageal squamous cell carcinoma tissues. Levels of both the message and protein are reduced in carcinoma samples. In adult human tissues, this gene is expressed in the the esophagus, stomach, small intestine, colon and placenta. Alternatively spliced transcript variants that encode the same protein have been identified. [provided by RefSeq, Jun 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 15:45430529-45448761
Strand Forward strand
Band q21.1
Transcripts
ENST00000344300 ENSP00000341610
ENST00000396650 ENSP00000379887
ENST00000558435 ENSP00000452967
ENST00000558632
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
Cellular Component
GO:0005634 nucleus
GO:0005739 mitochondrion
Orthologs
No orthologs found for this gene
Cross-References
SwissProt Q9C002
TrEMBL A0A024R5U4
UniProt Splice Variant
Entrez Gene 84419
UniGene Hs.112242
RefSeq NM_197955 NM_032413
HUGO HGNC:29898
OMIM 608409
CCDS CCDS10124
HPRD 16332
IMGT
EMBL AB026707 AF228422 BC021173 CH471082
GenPept AAH21173 AAK00708 BAB61021 EAW77312 EAW77313
RNA Seq Atlas 84419

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca