Version 5.4
Mus musculus Gene: Ss18
Summary
InnateDB Gene IDBG-129338.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ss18
Gene Name synovial sarcoma translocation, Chromosome 18
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000037013
Encoded Proteins
IDBP-129340
synovial sarcoma translocation, Chromosome 18
IDBP-129342
synovial sarcoma translocation, Chromosome 18
IDBP-129344
synovial sarcoma translocation, Chromosome 18
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000141380:
Gene Information
Type Protein coding
Genomic Location Chromosome 18:14624198-14682914
Strand Reverse strand
Band A1
Transcripts
ENSMUST00000040964 ENSMUSP00000047867
ENSMUST00000040924 ENSMUSP00000046320
ENSMUST00000092041 ENSMUSP00000089673
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 11 experimentally validated interaction(s) in this database.
They are also associated with 24 interaction(s) predicted by orthology.
Experimentally validated
Total 11 [view]
Protein-Protein 10 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 24 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
Biological Process
GO:0000226 microtubule cytoskeleton organization
GO:0000902 cell morphogenesis
GO:0006351 transcription, DNA-templated
GO:0007010 cytoskeleton organization
GO:0035556 intracellular signal transduction
GO:0042493 response to drug
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048013 ephrin receptor signaling pathway
Cellular Component
GO:0005634 nucleus
GO:0005881 cytoplasmic microtubule
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000141380
View Gene Order
ENSBTAG00000011531
Not yet available
Cross-References
SwissProt
TrEMBL Q6P1I1 Q8BJJ6
UniProt Splice Variant
Entrez Gene 268996
UniGene Mm.31761 Mm.405022
RefSeq NM_001161369 NM_001161371 NM_001161370 NM_009280
OMIM
CCDS CCDS57116 CCDS29070 CCDS50225
HPRD
IMGT
MGI ID MGI:107708
MGI Symbol Ss18
EMBL AC102692 AC104881 AK083622 AK149325 BC065062 BC096742
GenPept AAH65062 AAH96742 BAC38970 BAE28814
RNA Seq Atlas 268996

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca