Version 5.4
Mus musculus Gene: Ssc5d
Summary
InnateDB Gene IDBG-139376.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ssc5d
Gene Name scavenger receptor cysteine rich domain containing (5 domains)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000035279
Encoded Proteins
IDBP-139378
RIKEN cDNA A430110N23 gene
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000179954:
Gene Information
Type Protein coding
Genomic Location Chromosome 7:4925844-4944821
Strand Forward strand
Band A1
Transcripts
ENSMUST00000057612 ENSMUSP00000052126
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0001968 fibronectin binding
GO:0005044 scavenger receptor activity
GO:0005515 protein binding
GO:0043236 laminin binding
GO:0050840 extracellular matrix binding
Biological Process
GO:0006898 receptor-mediated endocytosis
GO:0006952 defense response
GO:0007275 multicellular organismal development
GO:0042494 detection of bacterial lipoprotein
GO:0045087 innate immune response
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
GO:2000482 regulation of interleukin-8 secretion
GO:2000483 negative regulation of interleukin-8 secretion
Cellular Component
GO:0005615 extracellular space
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0031012 extracellular matrix
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000179954
View Gene Order
ENSBTAG00000030885
Not yet available
Cross-References
SwissProt Q8BV57
TrEMBL
UniProt Splice Variant
Entrez Gene 269855
UniGene Mm.44190
RefSeq NM_173008
OMIM
CCDS CCDS20750
HPRD
IMGT
MGI ID MGI:3606211
MGI Symbol Ssc5d
EMBL AK079906 AK165666 BC141044 CH466627 EU850434
GenPept AAI41045 ACF54723 BAC37780 BAE38328 EDL31272
RNA Seq Atlas 269855

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca