Version 5.4
Mus musculus Gene: Rbmxl1
Summary
InnateDB Gene IDBG-170006.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbmxl1
Gene Name RNA binding motif protein, X linked-like-1
Synonyms Hnrpg; Rbmx; Rbmxrt
Species Mus musculus
Ensembl Gene ENSMUSG00000037070
Encoded Proteins
IDBP-170008
RNA binding motif protein, X chromosome retrogene
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 8:78505271-78508928
Strand Reverse strand
Band C1
Transcripts
ENSMUST00000049245 ENSMUSP00000048153
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 12 experimentally validated interaction(s) in this database.
Experimentally validated
Total 12 [view]
Protein-Protein 12 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0001047 core promoter binding
GO:0003676 nucleic acid binding
GO:0003682 chromatin binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome
GO:0001649 osteoblast differentiation
GO:0006366 transcription from RNA polymerase II promoter
GO:0006397 mRNA processing
GO:0006509 membrane protein ectodomain proteolysis
GO:0008380 RNA splicing
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048025 negative regulation of mRNA splicing, via spliceosome
GO:0048026 positive regulation of mRNA splicing, via spliceosome
GO:0051260 protein homooligomerization
GO:0071347 cellular response to interleukin-1
Cellular Component
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005719 nuclear euchromatin
GO:0016020 membrane
GO:0044530 supraspliceosomal complex
GO:0070062 extracellular vesicular exosome
GO:0071013 catalytic step 2 spliceosome
Orthologs
No orthologs found for this gene
Pathways
NETPATH
REACTOME
REACT_249110
mRNA Splicing pathway
REACT_233572
Gene Expression pathway
REACT_260226
mRNA Splicing - Major Pathway pathway
REACT_233950
Processing of Capped Intron-Containing Pre-mRNA pathway
KEGG
mmu03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt Q91VM5
TrEMBL
UniProt Splice Variant
Entrez Gene 19656
UniGene Mm.24718
RefSeq NM_001252089 NM_009033 XM_006530775 XM_006530776
OMIM
CCDS CCDS22430
HPRD
IMGT
MGI ID MGI:1343045
MGI Symbol Rbmxl1
EMBL AF031568 AK041927 BC011441 BC089350
GenPept AAB86639 AAH11441 AAH89350 BAC31099
RNA Seq Atlas 19656

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca