Version 5.4
Mus musculus Gene: Pcdh19
Summary
InnateDB Gene IDBG-170299.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Pcdh19
Gene Name protocadherin 19
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000051323
Encoded Proteins
IDBP-170301
protocadherin 19
IDBP-538634
protocadherin 19
IDBP-622919
protocadherin 19
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000165194:
The protein encoded by this gene is a member of the delta-2 protocadherin subclass of the cadherin superfamily. The encoded protein is thought to be a calcium-dependent cell-adhesion protein that is primarily expressed in the brain. Defects in this gene are a cause of epilepsy female-restricted with mental retardation (EFMR). Three transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome X:133582863-133688993
Strand Reverse strand
Band E3
Transcripts
ENSMUST00000060309 ENSMUSP00000049889
ENSMUST00000149154 ENSMUSP00000116886
ENSMUST00000167944 ENSMUSP00000128313
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
Biological Process
GO:0007156 homophilic cell adhesion
GO:0008150 biological_process
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000165194
View Gene Order
ENSBTAG00000014169
Not yet available
Cross-References
SwissProt Q80TF3
TrEMBL
UniProt Splice Variant
Entrez Gene 279653
UniGene Mm.39738 Mm.481531
RefSeq NM_001105245 XM_006528556 NM_001105246 XM_006528557
OMIM
CCDS CCDS41117 CCDS53181
HPRD
IMGT
MGI ID MGI:2685563
MGI Symbol Pcdh19
EMBL AK046726 AK122492 AL713863
GenPept BAC32847 BAC65774 CAM21149
RNA Seq Atlas 279653

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca