Version 5.4
Mus musculus Gene: Ythdc1
Summary
InnateDB Gene IDBG-175555.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ythdc1
Gene Name YTH domain containing 1
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000035851
Encoded Proteins
IDBP-175557
YTH domain containing 1
IDBP-400669
YTH domain containing 1
IDBP-400668
YTH domain containing 1
IDBP-532839
YTH domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000083896:
Gene Information
Type Protein coding
Genomic Location Chromosome 5:86804221-86836659
Strand Forward strand
Band E1
Transcripts
ENSMUST00000038384 ENSMUSP00000039133
ENSMUST00000119339 ENSMUSP00000113000
ENSMUST00000120498 ENSMUSP00000113951
ENSMUST00000156363 ENSMUSP00000122491
ENSMUST00000151489
ENSMUST00000148142
ENSMUST00000124123
ENSMUST00000123625
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
They are also associated with 28 interaction(s) predicted by orthology.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 28 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006376 mRNA splice site selection
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016604 nuclear body
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000083896
View Gene Order
ENSBTAG00000015572
Not yet available
Cross-References
SwissProt E9Q5K9
TrEMBL D6RG95
UniProt Splice Variant
Entrez Gene 231386
UniGene Mm.196325 Mm.490441
RefSeq NM_177680 XM_006534863 XM_006534867
OMIM
CCDS CCDS39127
HPRD
IMGT
MGI ID MGI:2443713
MGI Symbol Ythdc1
EMBL AC102016 AK173312 BC022697 BC048817
GenPept AAH22697 AAH48817 BAD32590
RNA Seq Atlas 231386

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca