Version 5.4
Mus musculus Gene: Arid2
Summary
InnateDB Gene IDBG-177992.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Arid2
Gene Name AT rich interactive domain 2 (ARID, RFX-like)
Synonyms 1700124K17Rik; 4432409D24Rik; zipzap/p200
Species Mus musculus
Ensembl Gene ENSMUSG00000033237
Encoded Proteins
IDBP-177996
AT rich interactive domain 2 (ARID, RFX-like)
IDBP-743884
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000189079:
ARID2 is a subunit of the PBAF chromatin-remodeling complex (see BAF180; MIM 606083), which facilitates ligand-dependent transcriptional activation by nuclear receptors (Yan et al., 2005 [PubMed 15985610]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 15:96287518-96404992
Strand Forward strand
Band F1
Transcripts
ENSMUST00000096250 ENSMUSP00000093969
ENSMUST00000134985 ENSMUSP00000135829
ENSMUST00000175735
ENSMUST00000176739
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 27 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 27 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005488 binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0046872 metal ion binding
Biological Process
GO:0006337 nucleosome disassembly
GO:0006355 regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005667 transcription factor complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000189079
View Gene Order
ENSBTAG00000011087
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_172623
Chromatin organization pathway
REACT_228108
RMTs methylate histone arginines pathway
REACT_172633
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL Q9D982
UniProt Splice Variant
Entrez Gene 77044
UniGene Mm.17166 Mm.401571 Mm.403607 Mm.408708
RefSeq NM_175251
OMIM
CCDS CCDS37185
HPRD
IMGT
MGI ID MGI:1924294
MGI Symbol Arid2
EMBL AC133578 AK007269 CH466550
GenPept BAB24929 EDL04244
RNA Seq Atlas 77044

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca