Version 5.4
Mus musculus Gene: Trim39
Summary
InnateDB Gene IDBG-181102.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Trim39
Gene Name tripartite motif-containing 39
Synonyms 1100001D15Rik; E130103K13Rik; mKIAA4179; RBCC-B30.2; Rnf23; tfp
Species Mus musculus
Ensembl Gene ENSMUSG00000045409
Encoded Proteins
IDBP-181104
tripartite motif-containing 39
IDBP-253338
tripartite motif-containing 39
IDBP-621910
tripartite motif-containing 39
IDBP-621921
tripartite motif-containing 39
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000204599:
This locus represents naturally occurring read-through transcription between the neighboring TRIM39 (tripartite motif-containing 39) and RPP21 (ribonuclease P/MRP 21kDa subunit) genes on chromosome 6. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010] The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The function of this protein has not been identified. This gene lies within the major histocompatibility complex class I region on chromosome 6. Alternate splicing results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 17:36258873-36272247
Strand Reverse strand
Band B1
Transcripts
ENSMUST00000042717 ENSMUSP00000039790
ENSMUST00000113706 ENSMUSP00000109336
ENSMUST00000113704
ENSMUST00000173665 ENSMUSP00000133529
ENSMUST00000173369 ENSMUSP00000133298
ENSMUST00000174197
ENSMUST00000172832
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 36 interaction(s) predicted by orthology.
Predicted by orthology
Total 36 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:2000059 negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:2001235 positive regulation of apoptotic signaling pathway
Cellular Component
GO:0005622 intracellular
GO:0005739 mitochondrion
GO:0005829 cytosol
Orthologs
Species
Homo sapiens
Gene ID
Gene Order
ENSG00000204599
View Gene Order
Cross-References
SwissProt
TrEMBL E9QLN4 Q570Z1
UniProt Splice Variant
Entrez Gene 79263
UniGene Mm.396272 Mm.40624
RefSeq NM_024468 NM_178281 XM_006525171 XM_006536706 XM_006536853 XM_006537437
OMIM
CCDS CCDS37611
HPRD
IMGT
MGI ID MGI:1890659
MGI Symbol Trim39
EMBL AC129554 AK220298
GenPept BAD90223
RNA Seq Atlas 79263

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca